Cagra.1194s0007 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1194s0007 T286018_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.909 0.989
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.909 0.989
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.776 0.796
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.775 0.839
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.775 0.839
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.757 0.785
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.757 0.785
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.735 0.742
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.703 0.720
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.703 0.720
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.693 0.806
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.693 0.785
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.693 0.785
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.678 0.753
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.678 0.753
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.666 0.796
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.666 0.796
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1194s0007.1.p Myb 14 61
Cagra.1194s0007.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

900 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF239 Bos taurus ENSBTAG00000019039 N
ZNF239 Callithrix jacchus ENSCJAG00000016278 N
ZNF239 Canis familiaris ENSCAFG00000031910 N
ENSCSAG00000018415 Chlorocebus sabaeus ENSCSAG00000018415 N
ZNF239 Dasypus novemcinctus ENSDNOG00000004406 N
ZNF239 Equus caballus ENSECAG00000003179 N
ZNF239 Gorilla gorilla ENSGGOG00000001913 N
ZNF239 Homo sapiens ENSG00000196793 N
ENSP00000341689 Macaca fascicularis ENSP00000341689 N
ENSMMUG00000022433 Macaca mulatta ENSMMUG00000022433 N
ENSMPUG00000020136 Mustela putorius furo ENSMPUG00000020136 N
Myotis_brandtii_ZNF239_10002120 Myotis brandtii Myotis_brandtii_ZNF239_10002120 N
ENSNLEG00000015896 Nomascus leucogenys ENSNLEG00000015896 N
ZNF239 Oryctolagus cuniculus ENSOCUG00000010992 N
ENSOARG00000003720 Ovis aries ENSOARG00000003720 N
ZNF239 Pan troglodytes ENSPTRG00000022725 N
ENSPANG00000022661 Papio anubis ENSPANG00000022661 N
ENSPPYG00000002214 Pongo abelii ENSPPYG00000002214 N
ZNF239 Procavia capensis ENSPCAG00000006595 N
ZNF239 Sus scrofa ENSSSCG00000029576 N
ENSTSYG00000004834 Tarsius syrichta ENSTSYG00000004834 N
ZNF239 Vicugna pacos ENSVPAG00000012405 N