Cagra.4306s0015 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.4306s0015 T286149_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.884 0.978
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.884 0.978
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4306s0015.1.p Myb 222 268
Cagra.4306s0015.1.p Myb 274 319

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_20.234 Carica papaya evm.TU.supercontig_20.234 N
orange1.1g038853m.g Citrus sinensis orange1.1g038853m.g N
Cucsa.029580 Cucumis sativus Cucsa.029580 N
GLYMA05G31410 Glycine max GLYMA05G31410 N
GLYMA08G14630 Glycine max GLYMA08G14630 N
Gorai.003G043500 Gossypium raimondii Gorai.003G043500 N
Gorai.007G241000 Gossypium raimondii Gorai.007G241000 N
PRUPE_ppa016118mg Prunus persica PRUPE_ppa016118mg N
29713.m000181 Ricinus communis 29713.m000181 N
PGSC0003DMG400020621 Solanum tuberosum PGSC0003DMG400020621 N
VIT_00s0357g00120 Vitis vinifera VIT_00s0357g00120 N