Carubv10009761m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10009761m.g T286290_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.909 0.978
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.824 0.892
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.824 0.892
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.695 0.720
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.684 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009761m Myb 61 108
Carubv10009761m Myb 114 159

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

610 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_14744 Aegilops tauschii F775_14744 I 0.000
F775_18231 Aegilops tauschii F775_18231 I 0.000
F775_30010 Aegilops tauschii F775_30010 I 0.000
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I 0.000
Aquca_017_00716 Aquilegia coerulea Aquca_017_00716 I 0.000
Aquca_030_00385 Aquilegia coerulea Aquca_030_00385 I 0.000
Aquca_034_00364 Aquilegia coerulea Aquca_034_00364 I 0.000
ATMYB14 Arabidopsis lyrata Al_scaffold_0004_1573 I 0.000
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.000
ATMYB72 Arabidopsis lyrata fgenesh2_kg.1__4638__AT1G56160.1 I 0.000
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I 0.000
ATMYB63 Arabidopsis lyrata fgenesh2_kg.2__2216__AT1G79180.1 I 0.000
AtMYB10 Arabidopsis lyrata fgenesh2_kg.3__1346__AT3G12820.1 I 0.000
MYB15 Arabidopsis lyrata fgenesh2_kg.3__2539__AT3G23250.1 I 0.000
ATMYB13 Arabidopsis thaliana AT1G06180 D 0.000
MYB58 Arabidopsis thaliana AT1G16490 D 0.000
ATMYB72 Arabidopsis thaliana AT1G56160 I 0.000
ATMYB63 Arabidopsis thaliana AT1G79180 D 0.000
MYB14 Arabidopsis thaliana AT2G31180 I 0.000
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.000
MYB15 Arabidopsis thaliana AT3G23250 D 0.000
Bostr.19424s0318 Boechera stricta Bostr.19424s0318 I 0.000
Bostr.20129s0353 Boechera stricta Bostr.20129s0353 I 0.000
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I 0.000
Bostr.3640s0057 Boechera stricta Bostr.3640s0057 I 0.000
Bostr.6758s0073 Boechera stricta Bostr.6758s0073 I 0.000
Bostr.7128s0256 Boechera stricta Bostr.7128s0256 I 0.000
BRADI3G52260 Brachypodium distachyon BRADI3G52260 I 0.000
BRADI5G15760 Brachypodium distachyon BRADI5G15760 I 0.000
BRADI5G20130 Brachypodium distachyon BRADI5G20130 I 0.000
Bo1g102190 Brassica oleracea Bo1g102190 I 0.000
Bo1g138940 Brassica oleracea Bo1g138940 I 0.000
Bo3g012180 Brassica oleracea Bo3g012180 I 0.000
Bo3g025100 Brassica oleracea Bo3g025100 I 0.000
Bo3g065150 Brassica oleracea Bo3g065150 I 0.000
Bo3g081700 Brassica oleracea Bo3g081700 I 0.000
Bo3g185830 Brassica oleracea Bo3g185830 I 0.000
Bo4g176020 Brassica oleracea Bo4g176020 I 0.000
Bo4g176030 Brassica oleracea Bo4g176030 I 0.000
Bo5g007320 Brassica oleracea Bo5g007320 I 0.000
Bo5g021910 Brassica oleracea Bo5g021910 I 0.000
Bo6g081140 Brassica oleracea Bo6g081140 I 0.000
Bo6g122640 Brassica oleracea Bo6g122640 I 0.000
Bo7g040780 Brassica oleracea Bo7g040780 I 0.000
Bo8g105490 Brassica oleracea Bo8g105490 I 0.000
Bra001472 Brassica rapa Bra001472 I 0.000
Bra001907 Brassica rapa Bra001907 I 0.000
Bra003619 Brassica rapa Bra003619 I 0.000
Bra006370 Brassica rapa Bra006370 I 0.000
Bra014929 Brassica rapa Bra014929 I 0.000
Bra015481 Brassica rapa Bra015481 I 0.000
Bra018267 Brassica rapa Bra018267 I 0.000
Bra021708 Brassica rapa Bra021708 I 0.000
Bra023742 Brassica rapa Bra023742 I 0.000
Bra026048 Brassica rapa Bra026048 I 0.000
Bra026720 Brassica rapa Bra026720 I 0.000
Bra030812 Brassica rapa Bra030812 I 0.000
Bra035097 Brassica rapa Bra035097 I 0.000
Bra039344 Brassica rapa Bra039344 I 0.000
PK03488.1 Cannabis sativa PK03488.1 I 0.000
PK08038.1 Cannabis sativa PK08038.1 I 0.000
PK20358.1 Cannabis sativa PK20358.1 I 0.000
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.000
Cagra.0998s0005 Capsella grandiflora Cagra.0998s0005 I 0.000
Cagra.1361s0065 Capsella grandiflora Cagra.1361s0065 I 0.000
Cagra.1671s0249 Capsella grandiflora Cagra.1671s0249 I 0.000
Cagra.2181s0015 Capsella grandiflora Cagra.2181s0015 I 0.000
Cagra.5641s0047 Capsella grandiflora Cagra.5641s0047 I 0.000
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I 0.000
Carubv10003283m.g Capsella rubella Carubv10003283m.g I 0.000
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.000
Carubv10015750m.g Capsella rubella Carubv10015750m.g I 0.000
Carubv10016289m.g Capsella rubella Carubv10016289m.g I 0.000
Carubv10020691m.g Capsella rubella Carubv10020691m.g I 0.000
Carubv10023905m.g Capsella rubella Carubv10023905m.g I 0.000
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I 0.000
evm.TU.supercontig_50.19 Carica papaya evm.TU.supercontig_50.19 I 0.000
Ca_12130 Cicer arietinum Ca_12130 I 0.000
Cla006077 Citrullus lanatus Cla006077 I 0.000
Cla007705 Citrullus lanatus Cla007705 I 0.000
Cla013669 Citrullus lanatus Cla013669 I 0.000
Cla019747 Citrullus lanatus Cla019747 I 0.000
Cla021845 Citrullus lanatus Cla021845 I 0.000
Ciclev10005102m.g Citrus clementina Ciclev10005102m.g I 0.000
Ciclev10005629m.g Citrus clementina Ciclev10005629m.g I 0.000
Ciclev10021699m.g Citrus clementina Ciclev10021699m.g I 0.000
Ciclev10022057m.g Citrus clementina Ciclev10022057m.g I 0.000
orange1.1g024484m.g Citrus sinensis orange1.1g024484m.g I 0.000
orange1.1g024492m.g Citrus sinensis orange1.1g024492m.g I 0.000
orange1.1g045411m.g Citrus sinensis orange1.1g045411m.g I 0.000
Cucsa.053600 Cucumis sativus Cucsa.053600 I 0.000
Cucsa.118450 Cucumis sativus Cucsa.118450 I 0.000
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.000
Cucsa.383620 Cucumis sativus Cucsa.383620 I 0.000
Cucsa.388490 Cucumis sativus Cucsa.388490 I 0.000
Eucgr.B02144 Eucalyptus grandis Eucgr.B02144 I 0.000
Eucgr.H00158 Eucalyptus grandis Eucgr.H00158 I 0.000
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.000
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.000
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I 0.000
Thhalv10012163m.g Eutrema salsugineum Thhalv10012163m.g I 0.000
Thhalv10017136m.g Eutrema salsugineum Thhalv10017136m.g I 0.000
Thhalv10018933m.g Eutrema salsugineum Thhalv10018933m.g I 0.000
Thhalv10021926m.g Eutrema salsugineum Thhalv10021926m.g I 0.000
Thhalv10022110m.g Eutrema salsugineum Thhalv10022110m.g I 0.000
gene29961-v1.0-hybrid Fragaria vesca gene29961-v1.0-hybrid I 0.000
GLYMA01G06192 Glycine max GLYMA01G06192 I 0.000
GLYMA02G12254 Glycine max GLYMA02G12254 I 0.000
GLYMA03G31980 Glycine max GLYMA03G31980 I 0.000
GLYMA08G17861 Glycine max GLYMA08G17861 I 0.000
GLYMA10G32410 Glycine max GLYMA10G32410 I 0.000
GLYMA15G41255 Glycine max GLYMA15G41255 I 0.000
GLYMA20G35180 Glycine max GLYMA20G35180 I 0.000
Gorai.001G177100 Gossypium raimondii Gorai.001G177100 I 0.000
Gorai.002G106300 Gossypium raimondii Gorai.002G106300 I 0.000
Gorai.004G269400 Gossypium raimondii Gorai.004G269400 I 0.000
Gorai.007G146200 Gossypium raimondii Gorai.007G146200 I 0.000
Gorai.008G151100 Gossypium raimondii Gorai.008G151100 I 0.000
Gorai.011G173900 Gossypium raimondii Gorai.011G173900 I 0.000
MLOC_53640 Hordeum vulgare MLOC_53640 I 0.000
MLOC_71418 Hordeum vulgare MLOC_71418 I 0.000
LPERR02G23410 Leersia perrieri LPERR02G23410 I 0.000
LPERR04G19390 Leersia perrieri LPERR04G19390 I 0.000
Lus10021185.g Linum usitatissimum Lus10021185.g I 0.000
chr5.CM0071.410.nd Lotus japonicus chr5.CM0071.410.nd I 0.000
MDP0000133542 Malus domestica MDP0000133542 I 0.000
MDP0000145050 Malus domestica MDP0000145050 I 0.000
MDP0000168728 Malus domestica MDP0000168728 I 0.000
MDP0000215675 Malus domestica MDP0000215675 I 0.000
MDP0000230141 Malus domestica MDP0000230141 I 0.000
MDP0000435315 Malus domestica MDP0000435315 I 0.000
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.000
cassava35427.valid.m1 Manihot esculenta cassava35427.valid.m1 I 0.000
cassava37350.valid.m1 Manihot esculenta cassava37350.valid.m1 I 0.000
cassava41325.m1 Manihot esculenta cassava41325.m1 I 0.000
MTR_1g043080 Medicago truncatula MTR_1g043080 I 0.000
MTR_1g076150 Medicago truncatula MTR_1g076150 I 0.000
MTR_2g067420 Medicago truncatula MTR_2g067420 I 0.000
mgf011672m Mimulus guttatus mgf011672m I 0.000
GSMUA_Achr11G00410_001 Musa acuminata GSMUA_Achr11G00410_001 I 0.000
GSMUA_Achr11G17870_001 Musa acuminata GSMUA_Achr11G17870_001 I 0.000
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I 0.000
GSMUA_Achr2G18090_001 Musa acuminata GSMUA_Achr2G18090_001 I 0.000
GSMUA_Achr4G18180_001 Musa acuminata GSMUA_Achr4G18180_001 I 0.000
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I 0.000
GSMUA_Achr4G27350_001 Musa acuminata GSMUA_Achr4G27350_001 I 0.000
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.000
GSMUA_Achr5G03520_001 Musa acuminata GSMUA_Achr5G03520_001 I 0.000
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I 0.000
GSMUA_Achr6G31520_001 Musa acuminata GSMUA_Achr6G31520_001 I 0.000
OBART02G28790 Oryza barthii OBART02G28790 I 0.000
OBART04G23680 Oryza barthii OBART04G23680 I 0.000
OB02G35920 Oryza brachyantha OB02G35920 I 0.000
OB04G30570 Oryza brachyantha OB04G30570 I 0.000
ORGLA04G0158700 Oryza glaberrima ORGLA04G0158700 I 0.000
ORGLA04G0202400 Oryza glaberrima ORGLA04G0202400 I 0.000
OGLUM02G29380 Oryza glumaepatula OGLUM02G29380 I 0.000
OGLUM04G23630 Oryza glumaepatula OGLUM04G23630 I 0.000
BGIOSGA005798 Oryza indica BGIOSGA005798 I 0.000
BGIOSGA014440 Oryza indica BGIOSGA014440 I 0.000
OLONG_022853 Oryza longistaminata OLONG_022853 I 0.000
OMERI02G27850 Oryza meridionalis OMERI02G27850 I 0.000
OMERI04G19570 Oryza meridionalis OMERI04G19570 I 0.000
ONIVA02G31530 Oryza nivara ONIVA02G31530 I 0.000
ONIVA04G17140 Oryza nivara ONIVA04G17140 I 0.000
ONIVA04G19740 Oryza nivara ONIVA04G19740 I 0.000
OPUNC02G26430 Oryza punctata OPUNC02G26430 I 0.000
OPUNC04G21230 Oryza punctata OPUNC04G21230 I 0.000
ORUFI02G30350 Oryza rufipogon ORUFI02G30350 I 0.000
ORUFI04G20280 Oryza rufipogon ORUFI04G20280 I 0.000
ORUFI04G25410 Oryza rufipogon ORUFI04G25410 I 0.000
ORUFI09G18880 Oryza rufipogon ORUFI09G18880 I 0.000
OS02G0695200 Oryza sativa OS02G0695200 I 0.000
OS04G0594100 Oryza sativa OS04G0594100 I 0.000
Pavir.Aa01159 Panicum virgatum Pavir.Aa01159 I 0.000
Pavir.Ga00752 Panicum virgatum Pavir.Ga00752 I 0.000
Pavir.Gb00587 Panicum virgatum Pavir.Gb00587 I 0.000
Pavir.Ia01684 Panicum virgatum Pavir.Ia01684 I 0.000
Pavir.Ia03281 Panicum virgatum Pavir.Ia03281 I 0.000
Pavir.J09313 Panicum virgatum Pavir.J09313 I 0.000
Pavir.J10932 Panicum virgatum Pavir.J10932 I 0.000
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I 0.000
PDK_20s1427521g001 Phoenix dactylifera PDK_20s1427521g001 I 0.000
POPTR_0002s03960 Populus trichocarpa POPTR_0002s03960 I 0.000
POPTR_0005s09930 Populus trichocarpa POPTR_0005s09930 I 0.000
POPTR_0005s24550 Populus trichocarpa POPTR_0005s24550 I 0.000
POPTR_0007s08190 Populus trichocarpa POPTR_0007s08190 I 0.000
POPTR_0008s16660 Populus trichocarpa POPTR_0008s16660 I 0.000
Pm009364 Prunus mume Pm009364 I 0.000
Pm011057 Prunus mume Pm011057 I 0.000
PRUPE_ppa020190mg Prunus persica PRUPE_ppa020190mg I 0.000
PRUPE_ppa026315mg Prunus persica PRUPE_ppa026315mg I 0.000
30169.m006322 Ricinus communis 30169.m006322 I 0.000
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I 0.000
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I 0.000
SapurV1A.0085s0540 Salix purpurea SapurV1A.0085s0540 I 0.000
SapurV1A.0233s0280 Salix purpurea SapurV1A.0233s0280 I 0.000
SapurV1A.0284s0110 Salix purpurea SapurV1A.0284s0110 I 0.000
SapurV1A.0483s0100 Salix purpurea SapurV1A.0483s0100 I 0.000
SapurV1A.1746s0010 Salix purpurea SapurV1A.1746s0010 I 0.000
Si010384m.g Setaria italica Si010384m.g I 0.000
Si017704m.g Setaria italica Si017704m.g I 0.000
Si040527m.g Setaria italica Si040527m.g I 0.000
Solyc03g005570.2 Solanum lycopersicum Solyc03g005570.2 I 0.000
Solyc05g055030.1 Solanum lycopersicum Solyc05g055030.1 I 0.000
Solyc06g083900.2 Solanum lycopersicum Solyc06g083900.2 I 0.000
Solyc10g005550.1 Solanum lycopersicum Solyc10g005550.1 I 0.000
PGSC0003DMG400011243 Solanum tuberosum PGSC0003DMG400011243 I 0.000
PGSC0003DMG400013405 Solanum tuberosum PGSC0003DMG400013405 I 0.000
PGSC0003DMG400020071 Solanum tuberosum PGSC0003DMG400020071 I 0.000
PGSC0003DMG400023405 Solanum tuberosum PGSC0003DMG400023405 I 0.000
PGSC0003DMG400038913 Solanum tuberosum PGSC0003DMG400038913 I 0.000
Sb01g019270 Sorghum bicolor Sb01g019270 I 0.000
Sb04g031110 Sorghum bicolor Sb04g031110 I 0.000
Sb06g027180 Sorghum bicolor Sb06g027180 I 0.000
TCM_004046 Theobroma cacao TCM_004046 I 0.000
TCM_020889 Theobroma cacao TCM_020889 I 0.000
TCM_026197 Theobroma cacao TCM_026197 I 0.000
TCM_032927 Theobroma cacao TCM_032927 I 0.000
Traes_2AL_CC403D182 Triticum aestivum Traes_2AL_CC403D182 I 0.000
Traes_2BL_34A0848F2 Triticum aestivum Traes_2BL_34A0848F2 I 0.000
Traes_2BL_FD8C2F815 Triticum aestivum Traes_2BL_FD8C2F815 I 0.000
Traes_2DL_54E6F0446 Triticum aestivum Traes_2DL_54E6F0446 I 0.000
Traes_2DL_D39684C41 Triticum aestivum Traes_2DL_D39684C41 I 0.000
Traes_6AL_BB730675A Triticum aestivum Traes_6AL_BB730675A I 0.000
Traes_6AL_C13753B31 Triticum aestivum Traes_6AL_C13753B31 I 0.000
Traes_6DL_8BAAC240D Triticum aestivum Traes_6DL_8BAAC240D I 0.000
TRIUR3_14330 Triticum urartu TRIUR3_14330 I 0.000
TRIUR3_18702 Triticum urartu TRIUR3_18702 I 0.000
VIT_05s0049g01010 Vitis vinifera VIT_05s0049g01010 I 0.000
VIT_05s0049g01020 Vitis vinifera VIT_05s0049g01020 I 0.000
VIT_07s0005g03340 Vitis vinifera VIT_07s0005g03340 I 0.000
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.000
VIT_19s0085g00050 Vitis vinifera VIT_19s0085g00050 I 0.000
GRMZM2G038722 Zea mays GRMZM2G038722 I 0.000
GRMZM2G097636 Zea mays GRMZM2G097636 I 0.000
GRMZM2G097638 Zea mays GRMZM2G097638 I 0.000
GRMZM5G833253 Zea mays GRMZM5G833253 I 0.000