Carubv10023302m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10023302m.g T286419_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G40260
M07057_2.00 		Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD		 Dap-seq
OMalley et al.(2016)
AT2G40260_col_a 		0.909 1.000
AT2G40260
M07058_2.00 		Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN		 Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a 		0.909 1.000
PK26523.1
M01283_2.00 		Cannabis sativa
NWHATTCYNN
NNRGAATDWN		 PBM
Lambert et al.(2019)
pTH11304 		0.870 0.894
AT2G38300
M07056_2.00 		Arabidopsis thaliana
WAHATTCYHTH
DADRGAATDTW		 Dap-seq
OMalley et al.(2016)
AT2G38300_col_a 		0.793 0.830
PHL6
M02295_2.00 		Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN		 PBM
Weirauch et al.(2014)
pTH7071 		0.689 0.702
PHL6
M07083_2.00 		Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN		 Dap-seq
OMalley et al.(2016)
At3g13040_col_b 		0.689 0.702
PHL1
M02310_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7122 		0.674 0.702
PHL1
M07132_2.00 		Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK		 Dap-seq
OMalley et al.(2016)
At5g29000_col_a 		0.674 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023302m Myb 87 138

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

453 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_183343 Agaricus bisporus AGABI2DRAFT_183343 N
M378DRAFT_156828 Amanita muscaria M378DRAFT_156828 N
L804_01011 Cryptococcus gattii L804_01011 N
GALMADRAFT_134896 Galerina marginata GALMADRAFT_134896 N
GYMLUDRAFT_83637 Gymnopus luxurians GYMLUDRAFT_83637 N
M413DRAFT_438457 Hebeloma cylindrosporum M413DRAFT_438457 N
fgenesh2_pg.C_scaffold_2000358 Heterobasidion annosum fgenesh2_pg.C_scaffold_2000358 N
HETIRDRAFT_115131 Heterobasidion irregulare HETIRDRAFT_115131 N
HYDPIDRAFT_98320 Hydnomerulius pinastri HYDPIDRAFT_98320 N
K443DRAFT_89219 Laccaria amethystina K443DRAFT_89219 N
LACBIDRAFT_293478 Laccaria bicolor LACBIDRAFT_293478 N
MPER_06925 Moniliophthora perniciosa MPER_06925 N
Moror_9094 Moniliophthora roreri Moror_9094 N
PAXRUDRAFT_821444 Paxillus rubicundulus PAXRUDRAFT_821444 N
PHACADRAFT_209047 Phanerochaete carnosa PHACADRAFT_209047 N
M404DRAFT_992679 Pisolithus tinctorius M404DRAFT_992679 N
M404DRAFT_1008279 Pisolithus tinctorius M404DRAFT_1008279 N
PLEOSDRAFT_1073965 Pleurotus ostreatus PLEOSDRAFT_1073965 N
SCHCODRAFT_105299 Schizophyllum commune SCHCODRAFT_105299 N
SCLCIDRAFT_1219298 Scleroderma citrinum SCLCIDRAFT_1219298 N
SERLA73DRAFT_162028 Serpula lacrymans SERLA73DRAFT_162028 N
M422DRAFT_30390 Sphaerobolus stellatus M422DRAFT_30390 N
CY34DRAFT_801159 Suillus luteus CY34DRAFT_801159 N
BN946_scf184798.g98 Trametes cinnabarina BN946_scf184798.g98 N
A1Q1_08057 Trichosporon asahii A1Q1_08057 N