gene12564-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene12564-v1.0-hybrid T287293_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.700 0.731
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.700 0.731
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.695 0.753
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.695 0.753
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.688 0.720
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.684 0.785
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.684 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna12564.1-v1.0-hybrid Myb 14 75
mrna12564.1-v1.0-hybrid Myb 81 126

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

354 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000001261 Ailuropoda melanoleuca ENSAMEG00000001261 I
ZFP1 Callithrix jacchus ENSCJAG00000014349 I
ZFP1 Canis familiaris ENSCAFG00000020085 I
ZFP1 Cavia porcellus ENSCPOG00000000634 I
ENSCSAG00000003718 Chlorocebus sabaeus ENSCSAG00000003718 I
ZFP1 Choloepus hoffmanni ENSCHOG00000003880 I
ENSDNOG00000006405 Dasypus novemcinctus ENSDNOG00000006405 I
ENSDNOG00000010525 Dasypus novemcinctus ENSDNOG00000010525 I
Zfp1 Dipodomys ordii ENSDORG00000011934 I
ZFP1 Felis catus ENSFCAG00000024047 I
ZFP1 Gorilla gorilla ENSGGOG00000006121 I
ZFP1 Homo sapiens ENSG00000184517 D
ENSSTOG00000022317 Ictidomys tridecemlineatus ENSSTOG00000022317 I
ZFP1 Loxodonta africana ENSLAFG00000003125 I
ENSP00000377080 Macaca fascicularis ENSP00000377080 I
ZFP1 Macaca mulatta ENSMMUG00000011587 I
ZFP1 Microcebus murinus ENSMICG00000015124 I
ENSMPUG00000009946 Mustela putorius furo ENSMPUG00000009946 I
Zfp1 Mus musculus ENSMUSG00000055835 D
Myotis_brandtii_ZFP1_10035453 Myotis brandtii Myotis_brandtii_ZFP1_10035453 I
ZFP1 Myotis lucifugus ENSMLUG00000002042 I
ENSNLEG00000013001 Nomascus leucogenys ENSNLEG00000013001 I
ZFP1 Ochotona princeps ENSOPRG00000006123 I
ZFP1 Oryctolagus cuniculus ENSOCUG00000001924 I
ZFP1 Otolemur garnettii ENSOGAG00000001902 I
ENSOARG00000006461 Ovis aries ENSOARG00000006461 I
ZFP1 Pan troglodytes ENSPTRG00000008354 I
ENSPANG00000016568 Papio anubis ENSPANG00000016568 I
ENSPPYG00000007556 Pongo abelii ENSPPYG00000007556 I
ZFP1 Procavia capensis ENSPCAG00000007561 I
Zfp1 Rattus norvegicus ENSRNOG00000019059 I
ZFP1 Sorex araneus ENSSARG00000013922 I
ZFP1 Sus scrofa ENSSSCG00000022668 I
ZFP1 Tupaia belangeri ENSTBEG00000011217 I
ZFP1 Tursiops truncatus ENSTTRG00000008949 I
ZFP1 Vicugna pacos ENSVPAG00000012526 I