Gorai.007G378300 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.007G378300 T287658_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.860 0.894
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.773 0.904
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.725 0.862
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.850 0.851
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.717 0.819
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.850 0.851
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.717 0.819
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.850 0.851
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.666 0.809
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.842 0.851
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.666 0.809
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.839 0.851
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.831 0.851
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.829 0.830
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.829 0.830
AT5G61620
M07149_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
AT5G61620_col_a 		0.824 0.809
AT5G61620
M07150_2.00 		Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR		 Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a 		0.824 0.809
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.817 0.809
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.817 0.809
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.817 0.809
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.799 0.830
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.799 0.830
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.793 0.830
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.722 0.809
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.722 0.809
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.722 0.809
AT3G10580
M07072_2.00 		Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT		 Dap-seq
OMalley et al.(2016)
AT3G10580_col_a 		0.709 0.702
AT3G10580
M07073_2.00 		Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG		 Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a 		0.709 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G378300.1 Myb 135 182
Gorai.007G378300.2 Myb 77 124
Gorai.007G378300.3 Myb 113 160

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

705 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000025596 Astyanax mexicanus ENSAMXG00000025596 I
TET3 Canis familiaris ENSCAFG00000008728 I
Cmyd_10006569 Chelonia mydas Cmyd_10006569 N
ENSCSAG00000015514 Chlorocebus sabaeus ENSCSAG00000015514 I
cxxc4 Danio rerio ENSDARG00000077817 I
TET3 Dasypus novemcinctus ENSDNOG00000047130 I
ENSGMOG00000019280 Gadus morhua ENSGMOG00000019280 I
ENSGMOG00000019812 Gadus morhua ENSGMOG00000019812 I
ENSGACG00000017555 Gasterosteus aculeatus ENSGACG00000017555 I
TET3 Homo sapiens ENSG00000187605 I
ENSLACG00000011147 Latimeria chalumnae ENSLACG00000011147 I
ENSLOCG00000012594 Lepisosteus oculatus ENSLOCG00000012594 I
Tet3 Mus musculus ENSMUSG00000034832 I
Myotis_brandtii_cxxc4_10005165 Myotis brandtii Myotis_brandtii_cxxc4_10005165 I
ENSNLEG00000000317 Nomascus leucogenys ENSNLEG00000000317 I
Ogr01870 Ophisaurus gracilis Ogr01870 N
ENSONIG00000017539 Oreochromis niloticus ENSONIG00000017539 I
ENSOANG00000009530 Ornithorhynchus anatinus ENSOANG00000009530 I
TET3 Oryctolagus cuniculus ENSOCUG00000016640 I
ENSORLG00000006474 Oryzias latipes ENSORLG00000006474 I
ENSOARG00000012255 Ovis aries ENSOARG00000012255 I
ENSPANG00000024069 Papio anubis ENSPANG00000024069 I
ENSPFOG00000003666 Poecilia formosa ENSPFOG00000003666 I
ENSPFOG00000012064 Poecilia formosa ENSPFOG00000012064 I
ENSPFOG00000012083 Poecilia formosa ENSPFOG00000012083 I
ENSPPYG00000012286 Pongo abelii ENSPPYG00000012286 I
Tet3 Rattus norvegicus ENSRNOG00000011387 I
Sakowv30045758m.g Saccoglossus kowalevskii Sakowv30045758m.g I
TET3 Sus scrofa ENSSSCG00000008292 I
cxxc4 Takifugu rubripes ENSTRUG00000004403 I
ENSTRUG00000017756 Takifugu rubripes ENSTRUG00000017756 I
ENSTNIG00000018036 Tetraodon nigroviridis ENSTNIG00000018036 I
ENSXMAG00000005442 Xiphophorus maculatus ENSXMAG00000005442 I