orange1.1g021851m.g (Citrus sinensis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 orange1.1g021851m.g T288836_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.763 0.860
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.793 0.913
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.763 0.860
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.763 0.860
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.763 0.860
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.763 0.860
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.736 0.814
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.736 0.791
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.736 0.791
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.690 0.767
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.690 0.767
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.684 0.783
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.684 0.783
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.684 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g021851m Myb 26 71
orange1.1g021861m Myb 26 71
orange1.1g021875m Myb 26 71
orange1.1g022044m Myb 26 68
orange1.1g024702m Myb 1 29

Links

Other Myb/SANT family TFs
Other Citrus sinensis TFs

290 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CaO19.12953 Candida albicans CaO19.12953 N
CaO19.5498 Candida albicans CaO19.5498 N
CD36_20730 Candida dubliniensis CD36_20730 N
G210_1427 Candida maltosa G210_1427 N
CORT_0B05860 Candida orthopsilosis CORT_0B05860 N
CPAG_03708 Candida parapsilosis CPAG_03708 N
CTRG_01780 Candida tropicalis CTRG_01780 N
DEHA2F01914g Debaryomyces hansenii DEHA2F01914g N
GNLVRS01_PISO0C11904g Millerozyma farinosa GNLVRS01_PISO0C11904g N
GNLVRS01_PISO0D11971g Millerozyma farinosa GNLVRS01_PISO0D11971g N
fgenesh1_pg.C_chr_5.1000473 Pichia stipitis fgenesh1_pg.C_chr_5.1000473 N
PICST_32309 Scheffersomyces stipitis PICST_32309 N