CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Db02194
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Db02194
T289113_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Db02194.1.p
Myb
282
347
GKRFTPEEDAKLMEAIEKYAEMKQLGDKGLEMIRASMQHPEIRGCWAEIATSLPHRPQMAVYKRAR
Pavir.Db02194.1.p
Myb
355
399
ERKWTQEEYEIVRRFVERNGTSWKELATELGKSEIHVKDTWRRMK
Pavir.Db02194.1.p
Myb
405
422
KGAWTQDEYQNLFDLVNL
Pavir.Db02194.1.p
Myb
426
468
VKAHQKITPSHRQLRDNISWEAISEKLTTRSNKDCCLKWYQQL
Pavir.Db02194.1.p
Myb
475
523
EGIWADTDDYLLMEALQKVDAVCVEDVDWERLLDHRSGELCRQRWNQMV
Pavir.Db02194.2.p
Myb
157
222
GKRFTPEEDAKLMEAIEKYAEMKQLGDKGLEMIRASMQHPEIRGCWAEIATSLPHRPQMAVYKRAR
Pavir.Db02194.2.p
Myb
230
274
ERKWTQEEYEIVRRFVERNGTSWKELATELGKSEIHVKDTWRRMK
Pavir.Db02194.2.p
Myb
280
297
KGAWTQDEYQNLFDLVNL
Pavir.Db02194.2.p
Myb
301
343
VKAHQKITPSHRQLRDNISWEAISEKLTTRSNKDCCLKWYQQL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00007p00053050
Amborella trichopoda
AMTR_s00007p00053050
I
ABI4
Arabidopsis lyrata
Al_scaffold_0004_2621
I
ABI4
Arabidopsis thaliana
AT2G40220
I
Bostr.23794s0036
Boechera stricta
Bostr.23794s0036
I
Bo3g034810
Brassica oleracea
Bo3g034810
I
Bo4g025410
Brassica oleracea
Bo4g025410
I
Bra000178
Brassica rapa
Bra000178
I
Bra004978
Brassica rapa
Bra004978
I
Cagra.7053s0005
Capsella grandiflora
Cagra.7053s0005
I
Carubv10025253m.g
Capsella rubella
Carubv10025253m.g
I
evm.TU.supercontig_1288.2
Carica papaya
evm.TU.supercontig_1288.2
I
Ca_12465
Cicer arietinum
Ca_12465
I
Cla006708
Citrullus lanatus
Cla006708
I
Ciclev10033578m.g
Citrus clementina
Ciclev10033578m.g
I
orange1.1g038194m.g
Citrus sinensis
orange1.1g038194m.g
I
Thhalv10017614m.g
Eutrema salsugineum
Thhalv10017614m.g
I
GLYMA14G06290
Glycine max
GLYMA14G06290
I
GLYMA02G43240
Glycine max
GLYMA02G43240
I
Gorai.011G291900
Gossypium raimondii
Gorai.011G291900
I
LPERR05G10140
Leersia perrieri
LPERR05G10140
I
Lus10040944.g
Linum usitatissimum
Lus10040944.g
I
Lus10009834.g
Linum usitatissimum
Lus10009834.g
I
chr2.CM0002.60.nc
Lotus japonicus
chr2.CM0002.60.nc
I
MDP0000628484
Malus domestica
MDP0000628484
I
MDP0000225376
Malus domestica
MDP0000225376
I
cassava20838.m1
Manihot esculenta
cassava20838.m1
I
cassava41265.m1
Manihot esculenta
cassava41265.m1
I
MTR_5g082950
Medicago truncatula
MTR_5g082950
I
mgf024416m
Mimulus guttatus
mgf024416m
I
GSMUA_Achr3G10100_001
Musa acuminata
GSMUA_Achr3G10100_001
I
GSMUA_Achr5G07400_001
Musa acuminata
GSMUA_Achr5G07400_001
I
GSMUA_Achr9G18060_001
Musa acuminata
GSMUA_Achr9G18060_001
I
ORGLA05G0109500
Oryza glaberrima
ORGLA05G0109500
I
OGLUM05G13600
Oryza glumaepatula
OGLUM05G13600
I
BGIOSGA018232
Oryza indica
BGIOSGA018232
I
OMERI05G11540
Oryza meridionalis
OMERI05G11540
I
ONIVA05G13490
Oryza nivara
ONIVA05G13490
I
OPUNC05G11000
Oryza punctata
OPUNC05G11000
I
ABI4
Oryza sativa
OS05G0351200
I
Pavir.J38620
Panicum virgatum
Pavir.J38620
I
Pavir.J33237
Panicum virgatum
Pavir.J33237
I
Pavir.J29572
Panicum virgatum
Pavir.J29572
I
POPTR_0008s07120
Populus trichocarpa
POPTR_0008s07120
I
POPTR_0010s19370
Populus trichocarpa
POPTR_0010s19370
I
Pm018953
Prunus mume
Pm018953
I
PRUPE_ppa015230mg
Prunus persica
PRUPE_ppa015230mg
I
29814.m000739
Ricinus communis
29814.m000739
I
SapurV1A.0061s0480
Salix purpurea
SapurV1A.0061s0480
I
SapurV1A.0650s0090
Salix purpurea
SapurV1A.0650s0090
I
SELMODRAFT_427925
Selaginella moellendorffii
SELMODRAFT_427925
I
SELMODRAFT_420500
Selaginella moellendorffii
SELMODRAFT_420500
I
PGSC0003DMG400034739
Solanum tuberosum
PGSC0003DMG400034739
I
PGSC0003DMG400041883
Solanum tuberosum
PGSC0003DMG400041883
I
Sb09g016550
Sorghum bicolor
Sb09g016550
I
TCM_042471
Theobroma cacao
TCM_042471
I
ABI4
Vitis vinifera
VIT_13s0067g01400
I
abi4
Zea mays
GRMZM2G093595
D