CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.Ea04142 *(Panicum virgatum)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Pavir.Ea04142	T289146_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TRP5 M01266_2.00	Arabidopsis thaliana	NHWAAACCYH	DRGGTTTWDN	PBM Lambert et al.(2019) pTH9963	0.800	0.809
PK21687.1 M01282_2.00	Cannabis sativa	HWAAACCYH	DRGGTTTWD	PBM Lambert et al.(2019) pTH11299	0.800	0.809
TRP1 M07148_2.00	Arabidopsis thaliana	AAACCCTAAACCCTAAACCCTAA	TTAGGGTTTAGGGTTTAGGGTTT	Dap-seq OMalley et al.(2016) TRP1_col	0.800	0.809
TRP2 M07092_2.00	Arabidopsis thaliana	AAACCCTAAACCCTAAACCC	GGGTTTAGGGTTTAGGGTTT	Dap-seq OMalley et al.(2016) TRP2_col_a	0.800	0.809
TRP2 M07093_2.00	Arabidopsis thaliana	AAACCCTAAACCCTAAACCCT	AGGGTTTAGGGTTTAGGGTTT	Dap-seq OMalley et al.(2016) TRP2_colamp_a	0.800	0.809
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Ea04142.1.p	Myb	543	593	RMPFSVGEVEALVEAVEQLGTGRWKDIKMHGFDGADHRTYVDLKDKWKTLV

Links
Other Myb/SANT family TFs
Other *Panicum virgatum* TFs

198 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
COCC4DRAFT_148181	Bipolaris maydis	COCC4DRAFT_148181	N	0.000
COCMIDRAFT_93104	Bipolaris oryzae	COCMIDRAFT_93104	N	0.000
COCSADRAFT_33739	Bipolaris sorokiniana	COCSADRAFT_33739	N	0.000
COCVIDRAFT_40633	Bipolaris victoriae	COCVIDRAFT_40633	N	0.000
FOXG_13086	Fusarium oxysporum	FOXG_13086	N	0.000
FVEG_12449	Fusarium verticillioides	FVEG_12449	N	0.000
PMAA_047890	Penicillium marneffei	PMAA_047890	N	0.000
PTT_18442	Pyrenophora teres	PTT_18442	N	0.000
PTRG_03263	Pyrenophora triticirepentis	PTRG_03263	N	0.000
SETTUDRAFT_167635	Setosphaeria turcica	SETTUDRAFT_167635	N	0.000
PMAA_047890	Talaromyces marneffei	PMAA_047890	N	0.000
TSTA_037850	Talaromyces stipitatus	TSTA_037850	N	0.000