Pavir.Ha00871 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ha00871 T289237_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.876 0.946
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.876 0.946
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.809 0.882
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.662 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ha00871.1.p Myb 14 61
Pavir.Ha00871.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

503 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000017605 Ailuropoda melanoleuca ENSAMEG00000017605 I
ENSP00000230732-D1 Bos grunniens ENSP00000230732-D1 I
POU4F3 Bos taurus ENSBTAG00000018817 I
POU4F3 Callithrix jacchus ENSCJAG00000021307 I
POU4F3 Canis familiaris ENSCAFG00000006473 I
POU4F3 Cavia porcellus ENSCPOG00000025610 I
Cmyd_10007016 Chelonia mydas Cmyd_10007016 I
ENSCSAG00000012256 Chlorocebus sabaeus ENSCSAG00000012256 I
POU4F3 Dasypus novemcinctus ENSDNOG00000045606 I
POU4F3 Echinops telfairi ENSETEG00000006520 I
POU4F3 Equus caballus ENSECAG00000018410 I
POU4F3 Erinaceus europaeus ENSEEUG00000012660 I
POU4F3 Felis catus ENSFCAG00000030722 I
POU4F3 Gorilla gorilla ENSGGOG00000012435 I
POU4F3 Homo sapiens ENSG00000091010 D
ENSSTOG00000021302 Ictidomys tridecemlineatus ENSSTOG00000021302 I
ENSLACG00000008349 Latimeria chalumnae ENSLACG00000008349 I
POU4F3 Loxodonta africana ENSLAFG00000006932 I
ENSP00000230732 Macaca fascicularis ENSP00000230732 I
ENSMMUG00000022320 Macaca mulatta ENSMMUG00000022320 I
ENSMEUG00000009050 Macropus eugenii ENSMEUG00000009050 I
ENSMICG00000003274 Microcebus murinus ENSMICG00000003274 I
POU4F3 Monodelphis domestica ENSMODG00000010137 I
ENSMPUG00000007828 Mustela putorius furo ENSMPUG00000007828 I
Pou4f3 Mus musculus ENSMUSG00000024497 D
Myotis_brandtii_POU4F3_10017427 Myotis brandtii Myotis_brandtii_POU4F3_10017427 I
ENSNLEG00000009898 Nomascus leucogenys ENSNLEG00000009898 I
ENSOCUG00000022425 Oryctolagus cuniculus ENSOCUG00000022425 I
POU4F3 Otolemur garnettii ENSOGAG00000026756 I
ENSOARG00000003067 Ovis aries ENSOARG00000003067 I
POU4F3 Pan troglodytes ENSPTRG00000017374 I
ENSPANG00000008306 Papio anubis ENSPANG00000008306 I
ENSPSIG00000016096 Pelodiscus sinensis ENSPSIG00000016096 I
ENSPFOG00000003289 Poecilia formosa ENSPFOG00000003289 I
ENSPPYG00000015910 Pongo abelii ENSPPYG00000015910 I
POU4F3 Pteropus vampyrus ENSPVAG00000005224 I
Pou4f3 Rattus norvegicus ENSRNOG00000018842 I
ENSSHAG00000008089 Sarcophilus harrisii ENSSHAG00000008089 I
POU4F3 Sus scrofa ENSSSCG00000014412 I
POU4F3 Tupaia belangeri ENSTBEG00000014805 I
POU4F3 Tursiops truncatus ENSTTRG00000000937 I
ENSXMAG00000001410 Xiphophorus maculatus ENSXMAG00000001410 I