Pavir.J00444 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J00444 T289302_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.833 0.903
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.833 0.903
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.782 0.892
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.684 0.742
MYB111
M00882_2.00 		Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB111 		0.683 0.699
PK06182.1
M02349_2.00 		Cannabis sativa
WTACCTACCN
NGGTAGGTAW		 PBM
Weirauch et al.(2014)
pTH9581 		0.676 0.731
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.663 0.785
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.663 0.785
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.663 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J00444.1.p Myb 14 61
Pavir.J00444.1.p Myb 67 112
Pavir.J00444.2.p Myb 14 61
Pavir.J00444.2.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

705 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CADANGAG00006697 Aspergillus niger CADANGAG00006697 N
M437DRAFT_50153 Aureobasidium melanogenum M437DRAFT_50153 N
fgenesh1_pg.C_scaffold_17000099 Cryphonectria parasitica fgenesh1_pg.C_scaffold_17000099 N
FFUJ_11155 Fusarium fujikuroi FFUJ_11155 N
MGU_07846 Metarhizium guizhouense MGU_07846 N
OIDMADRAFT_46831 Oidiodendron maius OIDMADRAFT_46831 N
PITC_072410 Penicillium italicum PITC_072410 N
PODANS_5_6820 Podospora anserina PODANS_5_6820 N
SETTUDRAFT_27158 Setosphaeria turcica SETTUDRAFT_27158 N
VHEMI01226 Torrubiella hemipterigena VHEMI01226 N
VHEMI01230 Torrubiella hemipterigena VHEMI01230 N