Pavir.J11789 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J11789 T289366_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAX3
M02700_2.00 		Arabidopsis thaliana
SCACCTACCHCCN
NGGDGGTAGGTGS		 SELEX
Mathelier et al.(2014)
MA0576.1 		0.672 0.742
RAX3
M11043_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB84_01 		0.672 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J11789.1.p Myb 14 62
Pavir.J11789.1.p Myb 68 113

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

409 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000014972 Ailuropoda melanoleuca ENSAMEG00000014972 I
ENSAPLG00000013833 Anas platyrhynchos ENSAPLG00000013833 I
MSANTD3 Anolis carolinensis ENSACAG00000025458 I
Afo_R015982 Aptenodytes forsteri Afo_R015982 I
ENSBTAP00000042141-D1 Bos grunniens ENSBTAP00000042141-D1 I
MSANTD3 Bos taurus ENSBTAG00000037580 I
MSANTD3-TMEFF1 Callithrix jacchus ENSCJAG00000011484 I
Aan_R010550 Calypte anna Aan_R010550 I
MSANTD3-TMEFF1 Canis familiaris ENSCAFG00000002577 I
Cmyd_10021233 Chelonia mydas Cmyd_10021233 I
MSANTD3 Dasypus novemcinctus ENSDNOG00000035872 I
MSANTD3 Equus caballus ENSECAG00000021233 I
MSANTD3-TMEFF1 Felis catus ENSFCAG00000030912 I
ENSFALG00000004875 Ficedula albicollis ENSFALG00000004875 I
MSANTD3 Gallus gallus ENSGALG00000013403 I
Gfo_R006190 Geospiza fortis Gfo_R006190 I
ENSGGOG00000026943 Gorilla gorilla ENSGGOG00000026943 I
MSANTD3 Homo sapiens ENSG00000066697 D
ENSSTOG00000026763 Ictidomys tridecemlineatus ENSSTOG00000026763 I
MSANTD3 Loxodonta africana ENSLAFG00000031827 I
ENSP00000364022 Macaca fascicularis ENSP00000364022 I
MSANTD3-TMEFF1 Macaca mulatta ENSMMUG00000009775 I
MSANTD3 Meleagris gallopavo ENSMGAG00000007604 I
MSANTD3 Monodelphis domestica ENSMODG00000012608 I
ENSMPUG00000006828 Mustela putorius furo ENSMPUG00000006828 I
Msantd3 Mus musculus ENSMUSG00000039693 I
MSANTD3 Myotis lucifugus ENSMLUG00000029223 I
ENSNLEG00000017101 Nomascus leucogenys ENSNLEG00000017101 I
Ogr12786 Ophisaurus gracilis Ogr12786 I
MSANTD3 Ornithorhynchus anatinus ENSOANG00000002115 I
MSANTD3-TMEFF1 Oryctolagus cuniculus ENSOCUG00000006373 I
MSANTD3 Otolemur garnettii ENSOGAG00000024703 I
ENSOARG00000007598 Ovis aries ENSOARG00000007598 I
MSANTD3 Pan troglodytes ENSPTRG00000038720 I
Pvit_18499 Pogona vitticeps Pvit_18499 I
ENSPPYG00000019447 Pongo abelii ENSPPYG00000019447 I
Msantd3 Rattus norvegicus ENSRNOG00000008159 I
ENSSHAG00000009700 Sarcophilus harrisii ENSSHAG00000009700 I
ENSSSCG00000005390 Sus scrofa ENSSSCG00000005390 I
MSANTD3 Taeniopygia guttata ENSTGUG00000008752 I
Tal_R010083 Tyto alba Tal_R010083 I
msantd3.L Xenopus laevis XB-GENE-5737853 I
msantd3 Xenopus tropicalis XB-GENE-5737820 I