Pavir.J34894 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J34894 T289459_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.891 0.978
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.881 0.913
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.881 0.913
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.845 0.870
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.845 0.870
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.795 0.870
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.795 0.870
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.795 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.790 0.783
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.790 0.783
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.790 0.783
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.790 0.783
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.790 0.783
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.775 0.826
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J34894.1.p Myb 24 69

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

301 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGOS_AGR369W Ashbya gossypii AGOS_AGR369W N
CAGL0A04455g Candida glabrata CAGL0A04455g N
PGUG_03868 Candida guilliermondii PGUG_03868 N
CORT_0A01490 Candida orthopsilosis CORT_0A01490 N
CPAG_04485 Candida parapsilosis CPAG_04485 N
CANTEDRAFT_137002 Candida tenuis CANTEDRAFT_137002 N
DEHA2C16676g Debaryomyces hansenii DEHA2C16676g N
Ecym_4686 Eremothecium cymbalariae Ecym_4686 N
KLLA0_E20307g Kluyveromyces lactis KLLA0_E20307g N
KLTH0C06776g Kluyveromyces thermotolerans KLTH0C06776g N
Kwal_10852 Kluyveromyces waltii Kwal_10852 N
PAS_chr3_0905 Komagataella pastoris PAS_chr3_0905 N
KUCA_T00001887001 Kuraishia capsulata KUCA_T00001887001 N
SAKL0F12342g Lachancea kluyveri SAKL0F12342g N
LALA0_S01e06766g Lachancea lanzarotensis LALA0_S01e06766g N
KLTH0C06776g Lachancea thermotolerans KLTH0C06776g N
LELG_00073 Lodderomyces elongisporus LELG_00073 N
PGUG_03868 Meyerozyma guilliermondii PGUG_03868 N
GNLVRS01_PISO0L22055g Millerozyma farinosa GNLVRS01_PISO0L22055g N
GNLVRS01_PISO0K22054g Millerozyma farinosa GNLVRS01_PISO0K22054g N
HPODL_03022 Ogataea parapolymorpha HPODL_03022 N
JL09_g740 Pichia kudriavzevii JL09_g740 N
XP_002493143.1 Pichia pastoris XP_002493143.1 N
estExt_gwp_genewisePlus_worm.C_chr_3.10726 Pichia stipitis estExt_gwp_genewisePlus_worm.C_chr_3.10726 N
SU7_0079 Saccharomyces arboricola SU7_0079 N
1127_YBL066C Saccharomyces bayanus 1127_YBL066C N
SEF1 Saccharomyces cerevisiae YBL066C N
SKUD_188909 Saccharomyces kudriavzevii SKUD_188909 N
1560_Multiple Saccharomyces mikatae 1560_Multiple N
593_YBL066C Saccharomyces paradoxus 593_YBL066C N
AACERI_AaceriAGR369W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGR369W N
PICST_82707 Scheffersomyces stipitis PICST_82707 N
SPAPADRAFT_149277 Spathaspora passalidarum SPAPADRAFT_149277 N
TBLA_0D00630 Tetrapisispora blattae TBLA_0D00630 N
TPHA_0E00880 Tetrapisispora phaffii TPHA_0E00880 N
TDEL_0C01580 Torulaspora delbrueckii TDEL_0C01580 N
BN7_4777 Wickerhamomyces ciferrii BN7_4777 N
ZBAI_06026 Zygosaccharomyces bailii ZBAI_06026 N
ZBAI_00728 Zygosaccharomyces bailii ZBAI_00728 N
ZYRO0B03278g Zygosaccharomyces rouxii ZYRO0B03278g N