PK27693.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK27693.1 T290485_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK27693.1
M01285_2.00		 Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.785 0.882
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.733 0.806
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.733 0.806
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.670 0.817
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.670 0.817
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01285_2.00 Myb 46 94
M01285_2.00 Myb 154 201

DNA Binding Domains

Protein ID Domain From To Sequence
PK27693.1 Myb 46 94
PK27693.1 Myb 154 201

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR02G03850 Leersia perrieri LPERR02G03850 N
LPERR06G21240 Leersia perrieri LPERR06G21240 N
ORGLA02G0040900 Oryza glaberrima ORGLA02G0040900 N
OGLUM02G04330 Oryza glumaepatula OGLUM02G04330 N
ONIVA02G04420 Oryza nivara ONIVA02G04420 N
Pavir.Db00303 Panicum virgatum Pavir.Db00303 N
GRMZM2G175543 Zea mays GRMZM2G175543 N