CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra017980
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra017980
T292590_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC062
M00977_2.00
Arabidopsis thaliana
NTTMCTTAV
BTAAGKAAN
PBM
Lindemose et al.(2014)
NTL6
0.919
0.895
NAC062
M07212_2.00
Arabidopsis thaliana
CTTMNHNNBYAAGNWWHN
NDWWNCTTRVNNDNKAAG
Dap-seq
OMalley et al.(2016)
ANAC062_colamp_a
0.919
0.895
NAC062
M07213_2.00
Arabidopsis thaliana
TNCTTMDBNNBYAAG
CTTRVNNVHKAAGNA
Dap-seq
OMalley et al.(2016)
ANAC062_col
0.919
0.895
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra017980.1-P
NAC/NAM
17
144
PVGLRFRPTDEELVRFYLHRKINGHDDDVTAIREIDICKWEPWDLPGFSVIKTNDSEWLFFCPLDRKYPNGSRQNRATIAGYWKATGKDRKIKSGKNSIIGVKRTLVFHSGRAPKGTRTNWIMHEYRA
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy