Cagra.0834s0028 (Capsella grandiflora)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Cagra.0834s0028 T297365_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.968 0.982
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.968 0.982
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0834s0028.1.p NAC/NAM 28 154
Cagra.0834s0028.2.p NAC/NAM 28 154

Links

Other NAC/NAM family TFs
Other Capsella grandiflora TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000015160 Astyanax mexicanus ENSAMXG00000015160 N 0.000
ENSDORG00000008881 Dipodomys ordii ENSDORG00000008881 N 0.000
ENSGMOG00000009114 Gadus morhua ENSGMOG00000009114 N 0.000
ahrrb Gasterosteus aculeatus ENSGACG00000001925 N 0.000
ENSONIG00000017966 Oreochromis niloticus ENSONIG00000017966 N 0.000
ENSOCUG00000021638 Oryctolagus cuniculus ENSOCUG00000021638 N 0.000
ahr2 Oryzias latipes ENSORLG00000000135 N 0.000
ahrrb Oryzias latipes ENSORLG00000005309 N 0.000
ENSPFOG00000012230 Poecilia formosa ENSPFOG00000012230 N 0.000
ahrr Takifugu rubripes ENSTRUG00000003745 N 0.000
ahrrb Tetraodon nigroviridis ENSTNIG00000008751 N 0.000