CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cagra.6133s0030 *(Capsella grandiflora)* NAC/NAM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02365 (NAM)	IPR003441	Cagra.6133s0030	T297441_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
BRN2 M07217_2.00	Arabidopsis thaliana	CKTVHDNNNYAMGYWA	TWRCKTRNNNHDBAMG	Dap-seq OMalley et al.(2016) ANAC070_colamp_a	0.971	0.930
BRN2 M07218_2.00	Arabidopsis thaliana	TWDCKTVHDNHDYAMGYWAHH	DDTWRCKTRHDNHDBAMGHWA	Dap-seq OMalley et al.(2016) ANAC070_col	0.971	0.930
SMB M07184_2.00	Arabidopsis thaliana	TWNCKTVHDNHNYAMGYWAYH	DRTWRCKTRNDNHDBAMGNWA	Dap-seq OMalley et al.(2016) SMB_col_a	0.917	0.789
SMB M07185_2.00	Arabidopsis thaliana	TWNCKTVNNNNNYAMG	CKTRNNNNNBAMGNWA	Dap-seq OMalley et al.(2016) SMB_colamp_a	0.917	0.789
MDP0000762302 M02383_2.00	Malus domestica	NNNAMKHNWN	NWNDMKTNNN	PBM Weirauch et al.(2014) pTH9205	0.907	0.772
NAC012 M00971_2.00	Arabidopsis thaliana	NYAMGYHANN	NNTDRCKTRN	PBM Lindemose et al.(2014) SND1	0.886	0.772
For this family, TFs with SR scores > 0.870* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cagra.6133s0030.1.p	NAC/NAM	9	136	PPGFRFHPTDEELLHYYLKKKISYEKFDMEVIKEVDLNKIEPWDLQDRCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNCYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRI

Links
Other NAC/NAM family TFs
Other *Capsella grandiflora* TFs