Gorai.009G309300 (Gossypium raimondii)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Gorai.009G309300 T298143_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.949 0.860
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.949 0.860
NAC078
M02372_2.00 		Arabidopsis thaliana
NNRCAMGHMANN
NNTKDCKTGYNN		 PBM
Weirauch et al.(2014)
pTH7209 		0.873 0.754
NAC078
M07226_2.00 		Arabidopsis thaliana
TTDCTTGNDNNDCAAG
CTTGHNNHNCAAGHAA		 Dap-seq
OMalley et al.(2016)
NAC2_colamp_a 		0.873 0.754
NAC078
M07227_2.00 		Arabidopsis thaliana
DTTWCTTGNNNNRCAAG
CTTGYNNNNCAAGWAAH		 Dap-seq
OMalley et al.(2016)
NAC2_col_v3a 		0.873 0.754
NAC078
M11083_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC078_Q2 		0.873 0.754
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G309300.1 NAC/NAM 34 160
Gorai.009G309300.2 NAC/NAM 34 160
Gorai.009G309300.3 NAC/NAM 4 93

Links

Other NAC/NAM family TFs
Other Gossypium raimondii TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.H01022 Eucalyptus grandis Eucgr.H01022 N 0.000
GLYMA02G01600 Glycine max GLYMA02G01600 N 0.000
GLYMA10G01640 Glycine max GLYMA10G01640 N 0.000
Gorai.001G144200 Gossypium raimondii Gorai.001G144200 I 0.000
mgf022473m Mimulus guttatus mgf022473m N 0.000