Pavir.Aa00442 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Aa00442 T298740_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK27085.1
M01293_2.00 		Cannabis sativa
AATTTATT
AATAAATT		 PBM
Lambert et al.(2019)
pTH11262 		0.958 0.574
anac075
M07223_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYT
ARCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
ANAC075_col_a 		0.958 0.574
NAC073
M07221_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYH
DRCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
SND2_col_a 		0.946 0.591
NAC073
M07222_2.00 		Arabidopsis thaliana
CKTSWNNNWYACGYW
WRCGTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND2_colamp_a 		0.946 0.591
NAC010
M07167_2.00 		Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH
DRWDDCKTRWNNNWSAAGNWWN		 Dap-seq
OMalley et al.(2016)
SND3_colamp_a 		0.939 0.557
NAC010
M07168_2.00 		Arabidopsis thaliana
CKTSWNNNWYAMGYW
WRCKTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND3_col_b 		0.939 0.557
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa00442.1.p NAC/NAM 59 197
Pavir.Aa00442.2.p NAC/NAM 47 185
Pavir.Aa00442.3.p NAC/NAM 59 197
Pavir.Aa00442.4.p NAC/NAM 47 185

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

345 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00759 Aegilops tauschii F775_00759 N
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I
BRADI2G34600 Brachypodium distachyon BRADI2G34600 N
LPERR01G03590 Leersia perrieri LPERR01G03590 I
LPERR05G03980 Leersia perrieri LPERR05G03980 N
OBART05G04450 Oryza barthii OBART05G04450 N
OBART01G03950 Oryza barthii OBART01G03950 N
OB05G14140 Oryza brachyantha OB05G14140 N
OB01G13800 Oryza brachyantha OB01G13800 N
ORGLA01G0034700 Oryza glaberrima ORGLA01G0034700 N
ORGLA05G0041400 Oryza glaberrima ORGLA05G0041400 N
OGLUM01G04250 Oryza glumaepatula OGLUM01G04250 N
OGLUM05G04370 Oryza glumaepatula OGLUM05G04370 N
BGIOSGA002833 Oryza indica BGIOSGA002833 N
OLONG_015419 Oryza longistaminata OLONG_015419 N
OMERI01G03850 Oryza meridionalis OMERI01G03850 N
OMERI05G04410 Oryza meridionalis OMERI05G04410 N
ONIVA05G04820 Oryza nivara ONIVA05G04820 N
ONIVA01G04390 Oryza nivara ONIVA01G04390 N
OPUNC01G03610 Oryza punctata OPUNC01G03610 N
OPUNC05G04080 Oryza punctata OPUNC05G04080 N
ORUFI01G04050 Oryza rufipogon ORUFI01G04050 N
ORUFI05G04670 Oryza rufipogon ORUFI05G04670 N
OS05G0163900 Oryza sativa OS05G0163900 N
Pavir.J32610 Panicum virgatum Pavir.J32610 N
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I
Si002655m.g Setaria italica Si002655m.g I
Si012213m.g Setaria italica Si012213m.g N
Sb09g004820 Sorghum bicolor Sb09g004820 N
Sb03g005250 Sorghum bicolor Sb03g005250 N
Traes_3B_2DF1A6E5B Triticum aestivum Traes_3B_2DF1A6E5B N
TRAES3BF130100030CFD_g Triticum aestivum TRAES3BF130100030CFD_g N
TRIUR3_21807 Triticum urartu TRIUR3_21807 N
GRMZM2G088443 Zea mays GRMZM2G088443 I
GRMZM2G369629 Zea mays GRMZM2G369629 N