CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSAMEG00000018355 *(Ailuropoda melanoleuca)* Nuclear receptor
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00105 (zf-C4)	IPR001628	ENSAMEG00000018355	T302455_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Esrrg M00817_2.00	Mus musculus	VAAGGTCA	TGACCTTB	PBM Weirauch et al.(2013) pTH3841	0.980	0.957
ESRRB M03367_2.00	Homo sapiens	TCAAGGTCAWH	DWTGACCTTGA	SELEX Jolma et al.(2013) ESRRB_1	0.980	0.957
ESRRG M03412_2.00	Homo sapiens	AAGGTCAHNYSAAGGTCA	TGACCTTSRNDTGACCTT	SELEX Jolma et al.(2013) ESRRG_1	0.980	0.957
ESRRG M03413_2.00	Homo sapiens	AAGGTCANHCAAGGTCA	TGACCTTGDNTGACCTT	SELEX Jolma et al.(2013) ESRRG_2	0.980	0.957
ESRRG M03414_2.00	Homo sapiens	YSAAGGTCAH	DTGACCTTSR	SELEX Jolma et al.(2013) ESRRG_3	0.980	0.957
ESRRB M05595_2.00	Homo sapiens	BBSAAGGTCRH	DYGACCTTSVV	SELEX Yin et al.(2017) ESRRB_eDBD_HT-SELEX	0.980	0.957
ESRRG M05673_2.00	Homo sapiens	NNSAAGGTCRN	NYGACCTTSNN	SELEX Yin et al.(2017) ESRRG_eDBD_HT-SELEX	0.980	0.957
ESRRG M05675_2.00	Homo sapiens	NNSAAGGTCRN	NYGACCTTSNN	SELEX Yin et al.(2017) ESRRG_FL_HT-SELEX	0.980	0.957
ESRRB M09272_2.00	Homo sapiens	BCAAGGTCA	TGACCTTGV	Misc Kulakovskiy et al.(2013) ERR2_HUMAN.H11MO.0.A	0.980	0.957
ESRRG M09296_2.00	Homo sapiens	TCAAGGTCA	TGACCTTGA	Misc Kulakovskiy et al.(2013) ERR3_HUMAN.H11MO.0.B	0.980	0.957
Esrrg M09321_2.00	Mus musculus	BSAAGGWCAB	VTGWCCTTSV	Misc Kulakovskiy et al.(2013) ERR3_MOUSE.H11MO.0.C	0.980	0.957
ESRRB M11129_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERR2_01	0.980	0.957
ESRRB M11130_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERR2_Q2	0.980	0.957
ESRRB M11131_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERR2_Q3	0.980	0.957
ESRRG M11185_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERR3_Q2_01	0.980	0.957
ESRRG M11186_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERR3_Q2	0.980	0.957
ESRRB M05596_2.00	Homo sapiens	NNSAAGGTCRH	DYGACCTTSNN	SELEX Yin et al.(2017) ESRRB_eDBD_Methyl-HT-SELEX	0.980	0.957
ESRRG M05674_2.00	Homo sapiens	NNSAAGGTCRN	NYGACCTTSNN	SELEX Yin et al.(2017) ESRRG_eDBD_Methyl-HT-SELEX	0.980	0.957
ESRRG M05676_2.00	Homo sapiens	NNSAAGGTCRN	NYGACCTTSNN	SELEX Yin et al.(2017) ESRRG_FL_Methyl-HT-SELEX	0.980	0.957
Esrrb M08034_2.00	Mus musculus	NNBYCAAGGTCANNB	VNNTGACCTTGRVNN	ChIP-seq Chen et al.(2011) SRP000217_Esrrb	0.980	0.943
Esrrb M09312_2.00	Mus musculus	NHDBTCAAGGTCANNBN	NVNNTGACCTTGAVHDN	Misc Kulakovskiy et al.(2013) ERR2_MOUSE.H11MO.0.A	0.980	0.943
Esrra M00183_2.00	Mus musculus	VAAGGTCAH	DTGACCTTB	PBM Badis et al.(2009) Esrra_2190	0.980	0.914
ESRRA M03397_2.00	Homo sapiens	NYSAAGGTCAH	DTGACCTTSRN	SELEX Jolma et al.(2013) ESRRA_1	0.980	0.914
ESRRA M03398_2.00	Homo sapiens	AAGGTCAWHCAAGGTCA	TGACCTTGDWTGACCTT	SELEX Jolma et al.(2013) ESRRA_2	0.980	0.914
ESRRA M03399_2.00	Homo sapiens	SAAGGTCAHNYSAAGGTCA	TGACCTTSRNDTGACCTTS	SELEX Jolma et al.(2013) ESRRA_3	0.980	0.914
ESRRA M03400_2.00	Homo sapiens	NYSAAGGTCAH	DTGACCTTSRN	SELEX Jolma et al.(2013) ESRRA_4	0.980	0.914
ESRRA M03401_2.00	Homo sapiens	RAGGTCABNCAAGGTCA	TGACCTTGNVTGACCTY	SELEX Jolma et al.(2013) ESRRA_5	0.980	0.914
ESRRA M03402_2.00	Homo sapiens	VAAGGTCAHNYSAAGGTCA	TGACCTTSRNDTGACCTTB	SELEX Jolma et al.(2013) ESRRA_6	0.980	0.914
Esrra M03430_2.00	Mus musculus	DAGGTYAKTMAAGGTCA	TGACCTTKAMTRACCTH	SELEX Jolma et al.(2013) Esrra_1	0.980	0.914
Esrra M03431_2.00	Mus musculus	KTCAAGGTCAT	ATGACCTTGAM	SELEX Jolma et al.(2013) Esrra_2	0.980	0.914
ESRRA M05655_2.00	Homo sapiens	NNSAAGGTCAN	NTGACCTTSNN	SELEX Yin et al.(2017) ESRRA_eDBD_HT-SELEX	0.980	0.914
ESRRA M05657_2.00	Homo sapiens	NNSAAGGTCAH	DTGACCTTSNN	SELEX Yin et al.(2017) ESRRA_FL_HT-SELEX	0.980	0.914
ESRRA M07988_2.00	Homo sapiens	RGGKCASMNTGMCCY	RGGKCANKSTGMCCY	ChIP-seq Gerstein et al.(2012) ECC-1_ERALPHA_HudsonAlpha	0.980	0.914
ESRRA M07989_2.00	Homo sapiens	NNRGGTCABNNTGHCCYNN	NNRGGDCANNVTGACCYNN	ChIP-seq Gerstein et al.(2012) T-47D_ERALPHA_HudsonAlpha	0.980	0.914
ESRRA M09290_2.00	Homo sapiens	BYSAAGGTCANNNNN	NNNNNTGACCTTSRV	Misc Kulakovskiy et al.(2013) ERR1_HUMAN.H11MO.0.A	0.980	0.914
Esrra M09319_2.00	Mus musculus	NNBYCAAGGTCA	TGACCTTGRVNN	Misc Kulakovskiy et al.(2013) ERR1_MOUSE.H11MO.0.A	0.980	0.914
ESRRA M11168_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERR1_Q2_01	0.980	0.914
ESRRA M11169_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERR1_Q2	0.980	0.914
ESRRA M11170_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERR1_Q3	0.980	0.914
ESRRA M11171_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ESRRA_10	0.980	0.914
ESRRA M05656_2.00	Homo sapiens	NNSAAGGTCRN	NYGACCTTSNN	SELEX Yin et al.(2017) ESRRA_eDBD_Methyl-HT-SELEX	0.980	0.914
ESRRA M05658_2.00	Homo sapiens	NBSAAGGTCRH	DYGACCTTSVN	SELEX Yin et al.(2017) ESRRA_FL_Methyl-HT-SELEX	0.980	0.914
ERR M03941_2.00	Drosophila melanogaster	BSAAGGTCRH	DYGACCTTSV	SELEX Nitta et al.(2015) ERR_1	0.972	0.857
ERR M06433_2.00	Drosophila melanogaster	MAAGGTCA	TGACCTTK	B1H Zhu et al.(2011) ERR_SANGER_5_FBgn0035849	0.972	0.857
Esr1 M00813_2.00	Mus musculus	NRKGTCANNN	NNNTGACMYN	PBM Weirauch et al.(2013) pTH3510	0.838	0.700
ESR1 M03356_2.00	Homo sapiens	NRGGTCAMVRTGACCTK	MAGGTCAYBKTGACCYN	SELEX Jolma et al.(2013) ESR1_1	0.838	0.700
ESR1 M05569_2.00	Homo sapiens	NAGGTCAYSRTGACCTN	NAGGTCAYSRTGACCTN	SELEX Yin et al.(2017) ESR1_eDBD_HT-SELEX	0.838	0.700
ESR1 M05571_2.00	Homo sapiens	NRGGTCANSNTGACCYN	NRGGTCANSNTGACCYN	SELEX Yin et al.(2017) ESR1_FL_HT-SELEX	0.838	0.700
ESR1 M07985_2.00	Homo sapiens	DNBYMAAGGTCANN	NNTGACCTTKRVNH	ChIP-seq Gerstein et al.(2012) HepG2_ERRA_Stanford	0.838	0.700
ESR1 M08217_2.00	Homo sapiens	NHNRGGTCANNNTGNCCY	RGGNCANNNTGACCYNDN	ChIP-seq Contrino et al.(2012) Mv66	0.838	0.700
ESR1 M08218_2.00	Homo sapiens	CCAAGGTCAS	STGACCTTGG	ChIP-seq Contrino et al.(2012) Mv67	0.838	0.700
ESR1 M09267_2.00	Homo sapiens	RGGKCABMNTGMCCY	RGGKCANKVTGMCCY	Misc Kulakovskiy et al.(2013) ESR1_HUMAN.H11MO.0.A	0.838	0.700
Esr1 M09309_2.00	Mus musculus	RGGDCABKSTGWCCY	RGGWCASMVTGHCCY	Misc Kulakovskiy et al.(2013) ESR1_MOUSE.H11MO.0.A	0.838	0.700
ESR1 M09604_2.00	Homo sapiens	NRGGTCANNNTGACC	GGTCANNNTGACCYN	Misc Heinz et al.(2010) MCF7-ERa_Unpublished	0.838	0.700
ESR1 M11098_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERALPHA_01	0.838	0.700
ESR1 M11099_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERALPHA_Q4	0.838	0.700
ESR1 M11100_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERALPHA_Q6_01	0.838	0.700
ESR1 M11101_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERALPHA_Q6_02	0.838	0.700
ESR1 M11102_2.00	Homo sapiens	NHRGGTCAVNNHNNHYBNN	NNVRDNNDNNBTGACCYDN	Transfac Matys et al.(2006) V$ER_Q6	0.838	0.700
ESR1 M11103_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ESR1_04	0.838	0.700
ESR1 M11104_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ESR1_05	0.838	0.700
ESR1 M05570_2.00	Homo sapiens	NAGGTCAYSRYGACCTH	DAGGTCRYSRTGACCTN	SELEX Yin et al.(2017) ESR1_eDBD_Methyl-HT-SELEX	0.838	0.700
ESR1 M05572_2.00	Homo sapiens	NRGGTCANSBYGACCYN	NRGGTCRVSNTGACCYN	SELEX Yin et al.(2017) ESR1_FL_Methyl-HT-SELEX	0.838	0.700
Esr2 M01297_2.00	Mus musculus	NNRGGTCAH	DTGACCYNN	PBM Lambert et al.(2019) pTH3511	0.834	0.686
ESR2 M08154_2.00	Homo sapiens	RGGTCASNNWGNCCY	RGGNCWNNSTGACCY	ChIP-seq Mathelier et al.(2014) MA0258.2	0.834	0.686
ESR2 M09279_2.00	Homo sapiens	RGGKCRVRSYGMCCY	RGGKCRSYBYGMCCY	Misc Kulakovskiy et al.(2013) ESR2_HUMAN.H11MO.0.A	0.834	0.686
Esr2 M09311_2.00	Mus musculus	RGGKCRVRSYGMCCY	RGGKCRSYBYGMCCY	Misc Kulakovskiy et al.(2013) ESR2_MOUSE.H11MO.0.A	0.834	0.686
ESR2 M11146_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERBETA_Q5_01	0.834	0.686
ESR2 M11147_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$ERBETA_Q5	0.834	0.686
Q6VU64_APLCA M02423_2.00	Aplysia californica	NRGGTCAN	NTGACCYN	PBM Weirauch et al.(2014) pTH6055	0.818	0.671
For this family, TFs with SR scores > 0.745* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSAMEP00000019397	Nuclear receptor	101	170	RLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFTKCLQVGMLR

Links
Other Nuclear receptor family TFs
Other *Ailuropoda melanoleuca* TFs

466 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
nAv.1.0.1.g06142	Acanthocheilonema viteae	nAv.1.0.1.g06142	I	0.751
ASU_12959	Ascaris suum	ASU_12959	I	0.760
gw.42.188.1	Branchiostoma floridae	gw.42.188.1	I	0.762
e_gw.719.1.1	Branchiostoma floridae	e_gw.719.1.1	I	0.753
e_gw.62.61.1	Branchiostoma floridae	e_gw.62.61.1	I	0.753
e_gw.42.96.1	Branchiostoma floridae	e_gw.42.96.1	I	0.762
Bm5380	Brugia malayi	Bm5380	I	0.756
Bm4091	Brugia malayi	Bm4091	I	0.756
BTMF_0001157701	Brugia timori	BTMF_0001157701	I	0.756
ENSCING00000004593	Ciona intestinalis	ENSCING00000004593	I	0.772
ENSCSAVG00000000069	Ciona savignyi	ENSCSAVG00000000069	I	0.772
EEL_0000298701	Elaeophora elaphi	EEL_0000298701	I	0.751
nLs.2.1.2.g07781	Litomosoides sigmodontis	nLs.2.1.2.g07781	I	0.751
LOAG_16177	Loa loa	LOAG_16177	I	0.751
LOAG_17605	Loa loa	LOAG_17605	I	0.751
LOAG_16094	Loa loa	LOAG_16094	I	0.751
ESRRB	Macaca mulatta	ENSMMUG00000016773	I	0.771
ESRRB	Myotis lucifugus	ENSMLUG00000014416	N	0.752
NEMVEDRAFT_v1g101676	Nematostella vectensis	NEMVEDRAFT_v1g101676	I	0.758
NEMVEDRAFT_v1g152310	Nematostella vectensis	NEMVEDRAFT_v1g152310	I	0.758
NEMVEDRAFT_v1g93844	Nematostella vectensis	NEMVEDRAFT_v1g93844	I	0.751
WBGene00237159	Onchocerca volvulus	WBGene00237159	I	0.757
WBGene00237163	Onchocerca volvulus	WBGene00237163	I	0.757
ENSPMAG00000008530	Petromyzon marinus	ENSPMAG00000008530	I	0.747
Sakowv30016840m.g	Saccoglossus kowalevskii	Sakowv30016840m.g	I	0.759
SPU_028255	Strongylocentrotus purpuratus	SPU_028255	I	0.746
SMUV_0001016301	Syphacia muris	SMUV_0001016301	I	0.764
TCLT_0000218901	Thelazia callipaeda	TCLT_0000218901	I	0.759
D918_00382	Trichuris suis	D918_00382	N

ENSAMEG00000018355 (Ailuropoda melanoleuca) Nuclear receptor

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

466 Related TFs

ENSAMEG00000018355 **(Ailuropoda melanoleuca)
Nuclear receptor**