CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

EcR *(Drosophila melanogaster)* Nuclear receptor
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00105 (zf-C4)	IPR001628	FBgn0000546	T305267_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
EcR M06414_2.00	Drosophila melanogaster	RAGGTCAW	WTGACCTY	B1H Zhu et al.(2011) EcR_SANGER_5_FBgn0000546	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NR1H4 M00368_2.00	Homo sapiens	NVRGGTCANN	NNTGACCYBN	PBM Barrera et al.(2016) NR1H4_REF	0.973	0.800
NR1H4 M05876_2.00	Homo sapiens	DRGKTCAHHKD	HMDDTGAMCYH	SMiLE-seq Isakova et al.(2017) NR1H4	0.973	0.800
NR1H4 M08152_2.00	Homo sapiens	NNGGTCATTNN	NNAATGACCNN	ChIP-seq Mathelier et al.(2014) MA1110.1	0.973	0.800
NR1H4 M09263_2.00	Homo sapiens	CCBVNVGGYCRBTGMCCYB	VRGGKCAVYGRCCBNBVGG	Misc Kulakovskiy et al.(2013) NR1H4_HUMAN.H11MO.0.B	0.973	0.800
Nr1h4 M09332_2.00	Mus musculus	CCBVNVGGYCRBTGMCCYB	VRGGKCAVYGRCCBNBVGG	Misc Kulakovskiy et al.(2013) NR1H4_MOUSE.H11MO.0.A	0.973	0.800
Nr1h4 M09618_2.00	Mus musculus	NRGGBCANTGVCCY	RGGBCANTGVCCYN	Misc Heinz et al.(2010) Liver-FXR_Chong_et_al.	0.973	0.800
NR1H4 M11086_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FXR_Q2	0.973	0.800
NR1H4 M11087_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FXR_Q3	0.973	0.800
NR1H4 M11088_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FXR_Q5	0.973	0.800
NR1H4 M11089_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FXRRXR_Q5	0.973	0.800
NR1H4 M00367_2.00	Homo sapiens	NNNTWTTATDHNN	NNDHATAAWANNN	PBM Barrera et al.(2016) NR1H4_C144R	0.973	0.786
nr1h5.S M11194_2.00	Xenopus laevis	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FXRIR1_Q6	0.967	0.843
NR1H3 M09264_2.00	Homo sapiens	NHRRGGBHABHNNRGGNCA	TGNCCYNNDVTDVCCYYDN	Misc Kulakovskiy et al.(2013) NR1H3_HUMAN.H11MO.0.B	0.949	0.714
Nr1h3 M09301_2.00	Mus musculus	VDGDNCARAGKBCAN	NTGVMCTYTGNHCHB	Misc Kulakovskiy et al.(2013) NR1H3_MOUSE.H11MO.0.A	0.949	0.714
Nr1h2 M09620_2.00	Mus musculus	RGGTYACTNNAGGTCA	TGACCTNNAGTRACCY	Misc Heinz et al.(2010) RAW-LXRb.biotin_GSE21512	0.899	0.643
nr2f2 M02393_2.00	Danio rerio	NNRGGTCAN	NTGACCYNN	PBM Weirauch et al.(2014) pTH5882	0.871	0.557
Nr2f1 M00822_2.00	Mus musculus	DRGGTCRN	NYGACCYH	PBM Weirauch et al.(2013) pTH3811	0.871	0.557
NR2F1 M03403_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Jolma et al.(2013) NR2F1_1	0.871	0.557
NR2F1 M03404_2.00	Homo sapiens	RRGGTCAARAGGTCAN	NTGACCTYTTGACCYY	SELEX Jolma et al.(2013) NR2F1_2	0.871	0.557
NR2F1 M03405_2.00	Homo sapiens	RRGGTCAN	NTGACCYY	SELEX Jolma et al.(2013) NR2F1_3	0.871	0.557
NR2F1 M03406_2.00	Homo sapiens	NHRRGGTCANVNG	CNBNTGACCYYDN	SELEX Jolma et al.(2013) NR2F1_4	0.871	0.557
NR2F1 M05661_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) NR2F1_eDBD_HT-SELEX_1	0.871	0.557
NR2F1 M05662_2.00	Homo sapiens	VRGGTCANYGACCYY	RRGGTCRNTGACCYB	SELEX Yin et al.(2017) NR2F1_eDBD_HT-SELEX_2	0.871	0.557
NR2F1 M05665_2.00	Homo sapiens	VRGGTCAAAGGTCAN	NTGACCTTTGACCYB	SELEX Yin et al.(2017) NR2F1_FL_HT-SELEX_1	0.871	0.557
NR2F1 M05666_2.00	Homo sapiens	RRGGTCANYGACCYY	RRGGTCRNTGACCYY	SELEX Yin et al.(2017) NR2F1_FL_HT-SELEX_2	0.871	0.557
NR2F1 M09291_2.00	Homo sapiens	NRRRBSRRRGGKCANVN	NBNTGMCCYYYSVYYYN	Misc Kulakovskiy et al.(2013) COT1_HUMAN.H11MO.0.C	0.871	0.557
Nr2f1 M09334_2.00	Mus musculus	YARAGGTCA	TGACCTYTR	Misc Kulakovskiy et al.(2013) COT1_MOUSE.H11MO.0.B	0.871	0.557
NR2F1 M11172_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$COUPTF1_Q6_01	0.871	0.557
NR2F1 M05663_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) NR2F1_eDBD_Methyl-HT-SELEX_1	0.871	0.557
NR2F1 M05664_2.00	Homo sapiens	NRGGTCANYGACCYH	DRGGTCRNTGACCYN	SELEX Yin et al.(2017) NR2F1_eDBD_Methyl-HT-SELEX_2	0.871	0.557
NR2F1 M05667_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) NR2F1_FL_Methyl-HT-SELEX_1	0.871	0.557
NR2F1 M05668_2.00	Homo sapiens	RRGGTCRNYGACCYY	RRGGTCRNYGACCYY	SELEX Yin et al.(2017) NR2F1_FL_Methyl-HT-SELEX_2	0.871	0.557
NR2F6 M02396_2.00	Homo sapiens	NNRGGTCR	YGACCYNN	PBM Weirauch et al.(2014) pTH6747	0.868	0.529
NR2F6 M03386_2.00	Homo sapiens	RRGGTCAAAAGGTCA	TGACCTTTTGACCYY	SELEX Jolma et al.(2013) NR2F6_1	0.868	0.529
NR2F6 M03387_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) NR2F6_2	0.868	0.529
NR2F6 M03388_2.00	Homo sapiens	NRGGTCAAAGGTCA	TGACCTTTGACCYN	SELEX Jolma et al.(2013) NR2F6_3	0.868	0.529
NR2F6 M05641_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Yin et al.(2017) NR2F6_eDBD_HT-SELEX_1	0.868	0.529
NR2F6 M05642_2.00	Homo sapiens	RAGGTCANTGACCTY	RAGGTCANTGACCTY	SELEX Yin et al.(2017) NR2F6_eDBD_HT-SELEX_2	0.868	0.529
NR2F6 M05645_2.00	Homo sapiens	NRGGTCARAGGTCRN	NYGACCTYTGACCYN	SELEX Yin et al.(2017) NR2F6_FL_HT-SELEX_1	0.868	0.529
NR2F6 M05646_2.00	Homo sapiens	NRGGTCANYGACCYY	RRGGTCRNTGACCYN	SELEX Yin et al.(2017) NR2F6_FL_HT-SELEX_2	0.868	0.529
NR2F6 M11153_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EAR2_Q2	0.868	0.529
NR2F6 M11154_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EAR2_Q4	0.868	0.529
NR2F6 M05643_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) NR2F6_eDBD_Methyl-HT-SELEX_1	0.868	0.529
NR2F6 M05644_2.00	Homo sapiens	RRGGTCRNYGACCYY	RRGGTCRNYGACCYY	SELEX Yin et al.(2017) NR2F6_eDBD_Methyl-HT-SELEX_2	0.868	0.529
NR2F6 M05647_2.00	Homo sapiens	NRGGTYADRGGKBRN	NYVMCCYHTRACCYN	SELEX Yin et al.(2017) NR2F6_FL_Methyl-HT-SELEX_1	0.868	0.529
NR2F6 M05648_2.00	Homo sapiens	NRGGTCANYGACCYN	NRGGTCRNTGACCYN	SELEX Yin et al.(2017) NR2F6_FL_Methyl-HT-SELEX_2	0.868	0.529
Nr2f2 M00184_2.00	Mus musculus	RRGGTCAN	NTGACCYY	PBM Badis et al.(2009) Nr2f2_2192	0.867	0.557
NR2F2 M08157_2.00	Homo sapiens	NNAAGGTCANN	NNTGACCTTNN	ChIP-seq Mathelier et al.(2014) MA1111.1	0.867	0.557
NR2F2 M08223_2.00	Homo sapiens	AAAGGTCA	TGACCTTT	ChIP-seq Contrino et al.(2012) Mv102	0.867	0.557
NR2F2 M08224_2.00	Homo sapiens	GGKCARAGGB	VCCTYTGMCC	ChIP-seq Contrino et al.(2012) Mv104	0.867	0.557
NR2F2 M09293_2.00	Homo sapiens	NARRGGTCADRDN	NHYHTGACCYYTN	Misc Kulakovskiy et al.(2013) COT2_HUMAN.H11MO.0.A	0.867	0.557
Nr2f2 M09325_2.00	Mus musculus	NNHRAGGTCANVD	HBNTGACCTYDNN	Misc Kulakovskiy et al.(2013) COT2_MOUSE.H11MO.0.A	0.867	0.557
NR2F2 M11180_2.00	Homo sapiens	WRRKKTCAARGGYTCA	TGARCCYTTGAMMYYW	Transfac Matys et al.(2006) V$ARP1_01	0.867	0.557
NR2F2 M11181_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$COUPTF2_Q6	0.867	0.557
svp M06423_2.00	Drosophila melanogaster	ARGGTCA	TGACCYK	B1H Zhu et al.(2011) svp_SANGER_5_FBgn0003651	0.865	0.543
Rorb M00820_2.00	Mus musculus	NRGGTCANN	NNTGACCYN	PBM Weirauch et al.(2013) pTH3469	0.855	0.543
rorb M02404_2.00	Tetraodon nigroviridis	NGAGGTCANN	NNTGACCTCN	PBM Weirauch et al.(2014) pTH6589	0.855	0.543
RORB M05677_2.00	Homo sapiens	DAWNTRGGTYAGTRGGTCAN	NTGACCYACTRACCYANWTH	SELEX Yin et al.(2017) RORB_eDBD_HT-SELEX_1	0.855	0.543
RORB M05678_2.00	Homo sapiens	NAWNKRGGTCAYGACCYMNWTN	NAWNKRGGTCRTGACCYMNWTN	SELEX Yin et al.(2017) RORB_eDBD_HT-SELEX_2	0.855	0.543
RORB M05883_2.00	Homo sapiens	AWNBRGGTCAN	NTGACCYVNWT	SMiLE-seq Isakova et al.(2017) RORb	0.855	0.543
RORB M11187_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RORBETA_Q2	0.855	0.543
RORB M05679_2.00	Homo sapiens	DAWBTRGGTYAGTRGGTCRN	NYGACCYACTRACCYAVWTH	SELEX Yin et al.(2017) RORB_eDBD_Methyl-HT-SELEX_1	0.855	0.543
RORB M05680_2.00	Homo sapiens	NAWNKRGGTCAYGACCYMNWTN	NAWNKRGGTCRTGACCYMNWTN	SELEX Yin et al.(2017) RORB_eDBD_Methyl-HT-SELEX_2	0.855	0.543
Rora M00819_2.00	Mus musculus	NNRGGTCA	TGACCYNN	PBM Weirauch et al.(2013) pTH3464	0.854	0.543
RORA M03353_2.00	Homo sapiens	NMRAGGTCAAVYYVAGGTCA	TGACCTBRRBTTGACCTYKN	SELEX Jolma et al.(2013) RORA_1	0.854	0.543
RORA M03354_2.00	Homo sapiens	WAWSTRGGTYASTAGGTCA	TGACCTASTRACCYASWTW	SELEX Jolma et al.(2013) RORA_2	0.854	0.543
RORA M02705_2.00	Homo sapiens	WWVDAGGTCA	TGACCTHBWW	SELEX Mathelier et al.(2014) MA0071.1	0.854	0.543
RORA M02706_2.00	Homo sapiens	NDWAWBTAGGTCAN	NTGACCTAVWTWHN	SELEX Mathelier et al.(2014) MA0072.1	0.854	0.543
RORA M09265_2.00	Homo sapiens	VWNDRGGBCARDR	YHYTGVCCYHNWB	Misc Kulakovskiy et al.(2013) RORA_HUMAN.H11MO.0.C	0.854	0.543
Rora M09327_2.00	Mus musculus	VWNDRGGBCARDR	YHYTGVCCYHNWB	Misc Kulakovskiy et al.(2013) RORA_MOUSE.H11MO.0.C	0.854	0.543
RORA M11090_2.00	Homo sapiens	DWWWVDAGGTCAH	DTGACCTHBWWWH	Transfac Matys et al.(2006) V$RORA1_01	0.854	0.543
RORA M11091_2.00	Homo sapiens	DWAWBTAGGTCAN	NTGACCTAVWTWH	Transfac Matys et al.(2006) V$RORA2_01	0.854	0.543
RORA M11092_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RORALPHA_Q4	0.854	0.543
RORA M11093_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RORA_Q4	0.854	0.543
VDR M03363_2.00	Homo sapiens	GRGTTCAYHGRGTTCA	TGAACYCDRTGAACYC	SELEX Jolma et al.(2013) VDR_1	0.852	0.543
Vdr M03429_2.00	Mus musculus	RRGTTCAYHGRGTTCA	TGAACYCDRTGAACYY	SELEX Jolma et al.(2013) Vdr_1	0.852	0.543
VDR M05877_2.00	Homo sapiens	HRRGTTCA	TGAACYYD	SMiLE-seq Isakova et al.(2017) VDR	0.852	0.543
VDR M09269_2.00	Homo sapiens	NRGGKCANNGRGKKCR	YGMMCYCNNTGMCCYN	Misc Kulakovskiy et al.(2013) VDR_HUMAN.H11MO.0.A	0.852	0.543
Vdr M09315_2.00	Mus musculus	NRGGKCANNGRGKKCR	YGMMCYCNNTGMCCYN	Misc Kulakovskiy et al.(2013) VDR_MOUSE.H11MO.0.A	0.852	0.543
VDR M09606_2.00	Homo sapiens	NRRGGTCANNRRGKKCANNN	NNNTGMMCYYNNTGACCYYN	Misc Heinz et al.(2010) GM10855-VDR+vitD_GSE22484	0.852	0.543
VDR M11116_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$VDR_Q3	0.852	0.543
VDR M11117_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$VDR_Q6_01	0.852	0.543
VDR M11118_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$VDR_Q6	0.852	0.543
RORC M05621_2.00	Homo sapiens	KRGGTCAYGMCCYM	KRGGKCRTGACCYM	SELEX Yin et al.(2017) RORC_eDBD_HT-SELEX_1	0.852	0.529
RORC M05622_2.00	Homo sapiens	NAWNKRGGTYANTRGGTCAN	NTGACCYANTRACCYMNWTN	SELEX Yin et al.(2017) RORC_eDBD_HT-SELEX_2	0.852	0.529
RORC M05880_2.00	Homo sapiens	NDAWNTRGGKCA	TGMCCYANWTHN	SMiLE-seq Isakova et al.(2017) RORc	0.852	0.529
RORC M09282_2.00	Homo sapiens	NDAWSTRRGTCA	TGACYYASWTHN	Misc Kulakovskiy et al.(2013) RORG_HUMAN.H11MO.0.C	0.852	0.529
RORC M05623_2.00	Homo sapiens	TRGGTCAYGACCYA	TRGGTCRTGACCYA	SELEX Yin et al.(2017) RORC_eDBD_Methyl-HT-SELEX_1	0.852	0.529
RORC M05624_2.00	Homo sapiens	NAWNTRGGTYASTAGGTCAN	NTGACCTASTRACCYANWTN	SELEX Yin et al.(2017) RORC_eDBD_Methyl-HT-SELEX_2	0.852	0.529
Q969A9_BOMMO M02410_2.00	Bombyx mori	VRGGTCDN	NHGACCYB	PBM Weirauch et al.(2014) pTH5516	0.845	0.529
Rorc M09324_2.00	Mus musculus	NDAWSTRRGTCA	TGACYYASWTHN	Misc Kulakovskiy et al.(2013) RORG_MOUSE.H11MO.0.B	0.830	0.514
Rorc M09617_2.00	Mus musculus	AWBTRGGTCA	TGACCYAVWT	Misc Heinz et al.(2010) EL4-RORgt.Flag_GSE56019	0.830	0.514
Nr2c1 M00812_2.00	Mus musculus	NRRGGTCANN	NNTGACCYYN	PBM Weirauch et al.(2013) pTH1284	0.828	0.543
Nr2c1 M02399_2.00	Mus musculus	RRGGTCAH	DTGACCYY	PBM Weirauch et al.(2014) pTH3466	0.828	0.543
NR2C1 M05597_2.00	Homo sapiens	NRGKKCRYGAMMYN	NRKKTCRYGMMCYN	SELEX Yin et al.(2017) NR2C1_eDBD_HT-SELEX_1	0.828	0.543
NR2C1 M05598_2.00	Homo sapiens	NRRGGTCAN	NTGACCYYN	SELEX Yin et al.(2017) NR2C1_eDBD_HT-SELEX_2	0.828	0.543
NR2C1 M09273_2.00	Homo sapiens	RBYVRVAGGTCAB	VTGACCTBYBRVY	Misc Kulakovskiy et al.(2013) NR2C1_HUMAN.H11MO.0.C	0.828	0.543
Nr2c1 M09304_2.00	Mus musculus	RBYVRVAGGTCAB	VTGACCTBYBRVY	Misc Kulakovskiy et al.(2013) NR2C1_MOUSE.H11MO.0.C	0.828	0.543
NR2C1 M05599_2.00	Homo sapiens	NRRGGTCAN	NTGACCYYN	SELEX Yin et al.(2017) NR2C1_eDBD_Methyl-HT-SELEX_1	0.828	0.543
NR2C1 M05600_2.00	Homo sapiens	RRGGTCRYGACCYY	RRGGTCRYGACCYY	SELEX Yin et al.(2017) NR2C1_eDBD_Methyl-HT-SELEX_2	0.828	0.543
RORC M02405_2.00	Tetraodon nigroviridis	NGAGGTCANN	NNTGACCTCN	PBM Weirauch et al.(2014) pTH6612	0.820	0.514
AAEL009588 M02388_2.00	Aedes aegypti	NRGGTCR	YGACCYN	PBM Weirauch et al.(2014) pTH5508	0.819	0.514
Hr46 M02406_2.00	Drosophila melanogaster	NRGGTCAN	NTGACCYN	PBM Weirauch et al.(2014) pTH6142	0.819	0.514
Hr46 M03926_2.00	Drosophila melanogaster	RGGTCAGTRGGTCA	TGACCYACTGACCY	SELEX Nitta et al.(2015) Hr46_1	0.819	0.514
Hr46 M06412_2.00	Drosophila melanogaster	AWKTGGGTYW	WRACCCAMWT	B1H Zhu et al.(2011) Hr46_FlyReg_FBgn0000448	0.819	0.514
Hr46 M06413_2.00	Drosophila melanogaster	HWNBAGGTCA	TGACCTVNWD	B1H Zhu et al.(2011) Hr46_SANGER_5_FBgn0000448	0.819	0.514
Nr2f6 M00811_2.00	Mus musculus	NRRGGTCANN	NNTGACCYYN	PBM Weirauch et al.(2013) pTH2193	0.816	0.514
Nr2f6 M03419_2.00	Mus musculus	RAGGTCAADAGGTCA	TGACCTHTTGACCTY	SELEX Jolma et al.(2013) Nr2f6_1	0.816	0.514
Nr2f6 M03420_2.00	Mus musculus	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) Nr2f6_2	0.816	0.514
Hr78 M06430_2.00	Drosophila melanogaster	HVAGGTCA	TGACCTBD	B1H Zhu et al.(2011) Hr78_SANGER_5_FBgn0015239	0.809	0.614
ENSPMAG00000000180 M02403_2.00	Petromyzon marinus	RGKWCRN	NYGWMCY	PBM Weirauch et al.(2014) pTH5509	0.799	0.557
NR2C2 M03407_2.00	Homo sapiens	VRGGTCAAAGGTCA	TGACCTTTGACCYB	SELEX Jolma et al.(2013) NR2C2_1	0.793	0.557
NR2C2 M05669_2.00	Homo sapiens	NRGGTCRN	NYGACCYN	SELEX Yin et al.(2017) NR2C2_eDBD_HT-SELEX	0.793	0.557
NR2C2 M08156_2.00	Homo sapiens	NVRGGTCARAGGKCA	TGMCCTYTGACCYBN	ChIP-seq Mathelier et al.(2014) MA0504.1	0.793	0.557
NR2C2 M07990_2.00	Homo sapiens	WBYRCTTCCGGGKYV	BRMCCCGGAAGYRVW	ChIP-seq Gerstein et al.(2012) HeLa-S3_TR4_UCD	0.793	0.557
NR2C2 M07991_2.00	Homo sapiens	DWBYRCTTCCGGGKY	RMCCCGGAAGYRVWH	ChIP-seq Gerstein et al.(2012) HepG2b_TR4_UCD	0.793	0.557
NR2C2 M07992_2.00	Homo sapiens	WBYRCTTCCGGGKYR	YRMCCCGGAAGYRVW	ChIP-seq Gerstein et al.(2012) K562b_TR4_UCD	0.793	0.557
NR2C2 M08221_2.00	Homo sapiens	DWBYDCTTCCGGGKY	RMCCCGGAAGHRVWH	ChIP-seq Contrino et al.(2012) Mv97	0.793	0.557
NR2C2 M08222_2.00	Homo sapiens	TCARAGGTCA	TGACCTYTGA	ChIP-seq Contrino et al.(2012) Mv98	0.793	0.557
NR2C2 M09292_2.00	Homo sapiens	RBTYMVRGGTCR	YGACCYBKRAVY	Misc Kulakovskiy et al.(2013) NR2C2_HUMAN.H11MO.0.B	0.793	0.557
Nr2c2 M09303_2.00	Mus musculus	RRGKSARAGGKCA	TGMCCTYTSMCYY	Misc Kulakovskiy et al.(2013) NR2C2_MOUSE.H11MO.0.A	0.793	0.557
NR2C2 M09611_2.00	Homo sapiens	RRGGTCARAGGTCA	TGACCTYTGACCYY	Misc Heinz et al.(2010) Hela-TR4_GSE24685	0.793	0.557
NR2C2 M11173_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR2C2_03	0.793	0.557
NR2C2 M11174_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR2C2_04	0.793	0.557
NR2C2 M11175_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_01	0.793	0.557
NR2C2 M11176_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_03	0.793	0.557
NR2C2 M11177_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_Q2_01	0.793	0.557
NR2C2 M11178_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_Q2	0.793	0.557
NR2C2 M11179_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TR4_Q3	0.793	0.557
NR2C2 M05670_2.00	Homo sapiens	NRGGTCRN	NYGACCYN	SELEX Yin et al.(2017) NR2C2_eDBD_Methyl-HT-SELEX	0.793	0.557
Smp_105090 M02412_2.00	Schistosoma mansoni	RGGTCANN	NNTGACCY	PBM Weirauch et al.(2014) pTH6174	0.785	0.543
O77476_BRUPA M02422_2.00	Brugia pahangi	NRGGTCAN	NTGACCYN	PBM Weirauch et al.(2014) pTH6019	0.784	0.557
ENSGALG00000028624 M02398_2.00	Gallus gallus	GRGKTCAH	DTGAMCYC	PBM Weirauch et al.(2014) pTH6492	0.781	0.571
THRB M03379_2.00	Homo sapiens	DTGACCTBATVAGGTCAN	NTGACCTBATVAGGTCAH	SELEX Jolma et al.(2013) THRB_1	0.776	0.586
THRB M03380_2.00	Homo sapiens	DTGACCTBANTRAGGTCAH	DTGACCTYANTVAGGTCAH	SELEX Jolma et al.(2013) THRB_2	0.776	0.586
THRB M03381_2.00	Homo sapiens	NTGWCCTYADNTRAGGTCAH	DTGACCTYANHTRAGGWCAN	SELEX Jolma et al.(2013) THRB_3	0.776	0.586
THRB M05629_2.00	Homo sapiens	NRGGTCAAAGGTCRN	NYGACCTTTGACCYN	SELEX Yin et al.(2017) THRB_eDBD_HT-SELEX_1	0.776	0.586
THRB M05630_2.00	Homo sapiens	NRRGGTCAYGACCYYN	NRRGGTCRTGACCYYN	SELEX Yin et al.(2017) THRB_eDBD_HT-SELEX_2	0.776	0.586
THRB M05633_2.00	Homo sapiens	NTGWCCTBRNYVAGGWCAN	NTGWCCTBRNYVAGGWCAN	SELEX Yin et al.(2017) THRB_FL_HT-SELEX_1	0.776	0.586
THRB M05634_2.00	Homo sapiens	TRAGGTCABVYVAGGTCAH	DTGACCTBRBVTGACCTYA	SELEX Yin et al.(2017) THRB_FL_HT-SELEX_2	0.776	0.586
THRB M09285_2.00	Homo sapiens	VRVSYVABVKSAGGWCA	TGWCCTSMBVTBRSBYB	Misc Kulakovskiy et al.(2013) THB_HUMAN.H11MO.0.C	0.776	0.586
THRB M11150_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$T3RBETA_Q6_01	0.776	0.586
THRB M05631_2.00	Homo sapiens	NRGGTYRDRGGKYRN	NYRMCCYHYRACCYN	SELEX Yin et al.(2017) THRB_eDBD_Methyl-HT-SELEX_1	0.776	0.586
THRB M05632_2.00	Homo sapiens	NNRGGTCAYGACCYBN	NVRGGTCRTGACCYNN	SELEX Yin et al.(2017) THRB_eDBD_Methyl-HT-SELEX_2	0.776	0.586
THRB M05635_2.00	Homo sapiens	NTGWCCTBRNYVAGGWCAN	NTGWCCTBRNYVAGGWCAN	SELEX Yin et al.(2017) THRB_FL_Methyl-HT-SELEX_1	0.776	0.586
THRB M05636_2.00	Homo sapiens	YRAGGWCAYGYRAGGWCAH	DTGWCCTYRCRTGWCCTYR	SELEX Yin et al.(2017) THRB_FL_Methyl-HT-SELEX_2	0.776	0.586
Q6VU64_APLCA M02423_2.00	Aplysia californica	NRGGTCAN	NTGACCYN	PBM Weirauch et al.(2014) pTH6055	0.764	0.471
RARG M02397_2.00	Homo sapiens	VGGTCANN	NNTGACCB	PBM Weirauch et al.(2014) pTH5430	0.755	0.514
Rarg M00810_2.00	Mus musculus	NNVGKTCANN	NNTGAMCBNN	PBM Weirauch et al.(2013) pTH4269	0.755	0.514
RARG M03391_2.00	Homo sapiens	SRGGTCAAAAGGTCAVD	HBTGACCTTTTGACCYS	SELEX Jolma et al.(2013) RARG_1	0.755	0.514
RARG M03392_2.00	Homo sapiens	RAGGTCAHVHWRAGGTCA	TGACCTYWDBDTGACCTY	SELEX Jolma et al.(2013) RARG_2	0.755	0.514
RARG M03393_2.00	Homo sapiens	RRGGTCAHNNRAGGTCA	TGACCTYNNDTGACCYY	SELEX Jolma et al.(2013) RARG_3	0.755	0.514
RARG M03394_2.00	Homo sapiens	GAGGTCAAAAGGTCAY	RTGACCTTTTGACCTC	SELEX Jolma et al.(2013) RARG_4	0.755	0.514
RARG M03395_2.00	Homo sapiens	RAGGTCAABYARRGKTCA	TGAMCYYTRVTTGACCTY	SELEX Jolma et al.(2013) RARG_5	0.755	0.514
RARG M03396_2.00	Homo sapiens	RAGGTCAHBNVRGGTCA	TGACCYBNVDTGACCTY	SELEX Jolma et al.(2013) RARG_6	0.755	0.514
Rarg M03416_2.00	Mus musculus	RRGGTCAAAAGGTCAH	DTGACCTTTTGACCYY	SELEX Jolma et al.(2013) Rarg_1	0.755	0.514
Rarg M03417_2.00	Mus musculus	RAGGTCAWVHAAAGGTCA	TGACCTTTDBWTGACCTY	SELEX Jolma et al.(2013) Rarg_2	0.755	0.514
Rarg M03418_2.00	Mus musculus	AAGGTCAHSARAGGTCA	TGACCTYTSDTGACCTT	SELEX Jolma et al.(2013) Rarg_3	0.755	0.514
RARG M05653_2.00	Homo sapiens	NRGGTCANV	BNTGACCYN	SELEX Yin et al.(2017) RARG_FL_HT-SELEX	0.755	0.514
RARG M05649_2.00	Homo sapiens	DRGGTCAAAAGKTCAN	NTGAMCTTTTGACCYH	SELEX Yin et al.(2017) RARG_eDBD_HT-SELEX_1	0.755	0.514
RARG M05650_2.00	Homo sapiens	RAGGTCATGACCTH	DAGGTCATGACCTY	SELEX Yin et al.(2017) RARG_eDBD_HT-SELEX_2	0.755	0.514
Rarg M05885_2.00	Mus musculus	NRGGTCANDRGKKYA	TRMMCYHNTGACCYN	SMiLE-seq Isakova et al.(2017) RARg	0.755	0.514
RARG M09289_2.00	Homo sapiens	RGGTCAVVVWGNMMNNDV	BHNNKKNCWBBBTGACCY	Misc Kulakovskiy et al.(2013) RARG_HUMAN.H11MO.0.B	0.755	0.514
Rarg M09300_2.00	Mus musculus	RGGTCAVVVWGNMMNNDV	BHNNKKNCWBBBTGACCY	Misc Kulakovskiy et al.(2013) RARG_MOUSE.H11MO.0.C	0.755	0.514
Rarg M09613_2.00	Mus musculus	RGKTCAAGGBCA	TGVCCTTGAMCY	Misc Heinz et al.(2010) ES-RARg_GSE30538	0.755	0.514
RARG M11167_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RARG_Q3	0.755	0.514
RARG M05654_2.00	Homo sapiens	NRGGTCRNV	BNYGACCYN	SELEX Yin et al.(2017) RARG_FL_Methyl-HT-SELEX	0.755	0.514
RARG M05651_2.00	Homo sapiens	DRGGTCAARRGGTCRN	NYGACCYYTTGACCYH	SELEX Yin et al.(2017) RARG_eDBD_Methyl-HT-SELEX_1	0.755	0.514
RARG M05652_2.00	Homo sapiens	DAGKTCRYGACCYY	RRGGTCRYGAMCTH	SELEX Yin et al.(2017) RARG_eDBD_Methyl-HT-SELEX_2	0.755	0.514
Rxrg M02400_2.00	Mus musculus	VRGGTCAN	NTGACCYB	PBM Weirauch et al.(2014) pTH2880	0.752	0.471
RXRG M03375_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRG_1	0.752	0.471
RXRG M03376_2.00	Homo sapiens	RRGGTCATGACCYY	RRGGTCATGACCYY	SELEX Jolma et al.(2013) RXRG_2	0.752	0.471
RXRG M03377_2.00	Homo sapiens	GRGGTCAAAGGTCA	TGACCTTTGACCYC	SELEX Jolma et al.(2013) RXRG_3	0.752	0.471
RXRG M03378_2.00	Homo sapiens	NRGGTCATGACCYC	GRGGTCATGACCYN	SELEX Jolma et al.(2013) RXRG_4	0.752	0.471
RXRG M02746_2.00	Homo sapiens	GGTCAAAGGTCA	TGACCTTTGACC	SELEX Jolma et al.(2010) RXRG_dimer	0.752	0.471
RXRG M05615_2.00	Homo sapiens	VRGGTCAAAGGTCAN	NTGACCTTTGACCYB	SELEX Yin et al.(2017) RXRG_FL_HT-SELEX_1	0.752	0.471
RXRG M05616_2.00	Homo sapiens	RRGGTCAYGACCYY	RRGGTCRTGACCYY	SELEX Yin et al.(2017) RXRG_FL_HT-SELEX_2	0.752	0.471
RXRG M05879_2.00	Homo sapiens	RGGTBAARGGTBRND	HNYVACCYTTVACCY	SMiLE-seq Isakova et al.(2017) RXRg	0.752	0.471
RXRG M09280_2.00	Homo sapiens	NGTCAAAGGTCAH	DTGACCTTTGACN	Misc Kulakovskiy et al.(2013) RXRG_HUMAN.H11MO.0.B	0.752	0.471
Rxrg M09305_2.00	Mus musculus	VDDVDNSVNRAGKTCAAGGYCA	TGRCCTTGAMCTYNBSNHBHHB	Misc Kulakovskiy et al.(2013) RXRG_MOUSE.H11MO.0.B	0.752	0.471
RXRG M05617_2.00	Homo sapiens	DRGGTBAARGGTBRN	NYVACCYTTVACCYH	SELEX Yin et al.(2017) RXRG_FL_Methyl-HT-SELEX_1	0.752	0.471
RXRG M05618_2.00	Homo sapiens	VRGGTCAYGACCYB	VRGGTCRTGACCYB	SELEX Yin et al.(2017) RXRG_FL_Methyl-HT-SELEX_2	0.752	0.471
usp M03934_2.00	Drosophila melanogaster	ARRGGTCAAAGGTCA	TGACCTTTGACCYYT	SELEX Nitta et al.(2015) usp_1	0.750	0.529
usp M06426_2.00	Drosophila melanogaster	HRRGGTCAH	DTGACCYYD	B1H Zhu et al.(2011) usp_SANGER_5_FBgn0003964	0.750	0.529
usp M02709_2.00	Drosophila melanogaster	GGGGTCACSN	NSGTGACCCC	SELEX Mathelier et al.(2014) MA0016.1	0.750	0.529
usp M09689_2.00	Drosophila melanogaster	KRGGTCACG	CGTGACCYM	Misc Kulakovskiy et al.(2009) usp	0.750	0.529
usp M11191_2.00	Drosophila melanogaster	GRGGTCAYS	SRTGACCYC	Transfac Matys et al.(2006) I$CF1_01	0.750	0.529
usp M11192_2.00	Drosophila melanogaster	GGGGTCAYS	SRTGACCCC	Transfac Matys et al.(2006) I$CF1_02	0.750	0.529
For this family, TFs with SR scores > 0.745* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
FBpp0085349	Nuclear receptor	233	302	ELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRP
FBpp0085350	Nuclear receptor	233	302	ELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRP
FBpp0085351	Nuclear receptor	233	302	ELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRP
FBpp0085352	Nuclear receptor	262	331	ELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRP
FBpp0085353	Nuclear receptor	53	122	ELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRP
FBpp0291631	Nuclear receptor	262	331	ELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRP

Links
Other Nuclear receptor family TFs
Other *Drosophila melanogaster* TFs

1644 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

EcR (Drosophila melanogaster) Nuclear receptor

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1644 Related TFs

EcR **(Drosophila melanogaster)
Nuclear receptor**