CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSPFOG00000003702 *(Poecilia formosa)* Paired box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00292 (PAX)	IPR001523	ENSPFOG00000003702	T311773_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
pax2b M02425_2.00	Danio rerio	HVNYSRNSCR	YGSNYSRNBD	PBM Weirauch et al.(2014) pTH8679	0.992	0.992
pax2 M02428_2.00	Xenopus tropicalis	NNNRNBCRNN	NNYGVNYNNN	PBM Weirauch et al.(2014) pTH8556	0.984	0.984
Pax5B M01301_2.00	Gallus gallus	NSNDTNNNN	NNNNAHNSN	PBM Lambert et al.(2019) pTH9781	0.976	0.976
PAX5 M03443_2.00	Homo sapiens	RNBYANYSAWSCGTRACN	NGTYACGSWTSRNTRVNY	SELEX Jolma et al.(2013) PAX5_1	0.976	0.976
PAX5 M08160_2.00	Homo sapiens	RDGCGTGACCNN	NNGGTCACGCHY	ChIP-seq Mathelier et al.(2014) MA0014.3	0.976	0.976
PAX5 M07995_2.00	Homo sapiens	BCAVYSRDSCRKRRC	GYYMYGSHYSRBTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5C20_HudsonAlpha	0.976	0.976
PAX5 M07996_2.00	Homo sapiens	BCASYSRDSCRTRAC	GTYAYGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5N19_HudsonAlpha	0.976	0.976
PAX5 M07997_2.00	Homo sapiens	CASYSRDSCRKRACN	NGTYMYGSHYSRSTG	ChIP-seq Gerstein et al.(2012) GM12891_PAX5C20_HudsonAlpha	0.976	0.976
PAX5 M07998_2.00	Homo sapiens	BCASYSRDSCGKRRC	GYYMCGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12892_PAX5C20_HudsonAlpha	0.976	0.976
PAX5 M08227_2.00	Homo sapiens	BCANYSRDGCGTRAM	KTYACGCHYSRNTGV	ChIP-seq Contrino et al.(2012) Mv108	0.976	0.976
PAX5 M08228_2.00	Homo sapiens	AGCGTGRCYG	CRGYCACGCT	ChIP-seq Contrino et al.(2012) Mv109	0.976	0.976
PAX5 M09341_2.00	Homo sapiens	SNVDGNKCARCVRAGCRDGAC	GTCHYGCTYBGYTGMNCHBNS	Misc Kulakovskiy et al.(2013) PAX5_HUMAN.H11MO.0.A	0.976	0.976
Pax5 M09342_2.00	Mus musculus	VDRNBCAVYVRDSCRKRRM	KYYMYGSHYBRBTGVNYHB	Misc Kulakovskiy et al.(2013) PAX5_MOUSE.H11MO.0.A	0.976	0.976
PAX5 M09622_2.00	Homo sapiens	BCASYSRDSCRTGRMN	NKYCAYGSHYSRSTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_1	0.976	0.976
PAX5 M09623_2.00	Homo sapiens	BCABNVRSCGTGAC	GTCACGSYBNVTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_2	0.976	0.976
PAX5 M11208_2.00	Homo sapiens	BCNNNRNKCANBGNWGNRKRGMSRSHNB	VNDSYSKCYMYNCWNCVNTGMNYNNNGV	Transfac Matys et al.(2006) V$PAX5_01	0.976	0.976
PAX5 M11209_2.00	Homo sapiens	VRHVDGDNDBBTNRAGCGKRACVRYNVH	DBNRYBGTYMCGCTYNAVVHNHCHBDYB	Transfac Matys et al.(2006) V$PAX5_02	0.976	0.976
PAX5 M11210_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_06	0.976	0.976
PAX5 M11211_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_07	0.976	0.976
PAX5 M11212_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_Q6	0.976	0.976
PAX8 M05685_2.00	Homo sapiens	NRNBYRNYSRWGCGTGACSN	NSGTCACGCWYSRNYRVNYN	SELEX Yin et al.(2017) PAX8_FL_HT-SELEX	0.944	0.944
Pax8 M09624_2.00	Rattus norvegicus	BCAGBCADSCRKGVM	KBCMYGSHTGVCTGV	Misc Heinz et al.(2010) Thyroid-Pax8_GSE26938	0.944	0.944
PAX8 M11205_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_01	0.944	0.944
PAX8 M11206_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_B	0.944	0.944
PAX8 M05686_2.00	Homo sapiens	NRNBCRNTSAWSCGYGACNN	NNGTCRCGSWTSANYGVNYN	SELEX Yin et al.(2017) PAX8_FL_Methyl-HT-SELEX	0.944	0.944
sv M01302_2.00	Drosophila melanogaster	NNNSCRBRDM	KHYVYGSNNN	PBM Lambert et al.(2019) pTH9773	0.888	0.888
sv M03949_2.00	Drosophila melanogaster	NBCRNYSAWGCGTGACS	SGTCACGCWTSRNYGVN	SELEX Nitta et al.(2015) sv_1	0.888	0.888
sv M06438_2.00	Drosophila melanogaster	RNYSRDSCGTRACNN	NNGTYACGSHYSRNY	B1H Zhu et al.(2011) sv_SOLEXA_5_FBgn0005561	0.888	0.888
egl-38 M02426_2.00	Caenorhabditis elegans	ACCGTGAYCAC	GTGRTCACGGT	PBM Weirauch et al.(2014) pTH8981	0.760	0.760
pax-2 M00706_2.00	Caenorhabditis elegans	RMSCRTRACS	SGTYAYGSKY	PBM Narasimhan et al.(2015) pTH10794	0.760	0.760
PAX1 M03442_2.00	Homo sapiens	DBCANTSAWGCGTGACS	SGTCACGCWTSANTGVH	SELEX Jolma et al.(2013) PAX1_1	0.744	0.744
Poxm M03944_2.00	Drosophila melanogaster	CAVTCAWGCGTGACR	YGTCACGCWTGABTG	SELEX Nitta et al.(2015) Poxm_1	0.744	0.744
Poxm M03945_2.00	Drosophila melanogaster	NYSAWGCRTRACS	SGTYAYGCWTSRN	SELEX Nitta et al.(2015) Poxm_2	0.744	0.744
PAX1 M05687_2.00	Homo sapiens	BCRNTSRWGCGTGACSN	NSGTCACGCWYSANYGV	SELEX Yin et al.(2017) PAX1_eDBD_HT-SELEX	0.744	0.744
Poxm M06436_2.00	Drosophila melanogaster	NNNNNNMVNHNRNSCRTGA	TCAYGSNYNDNBKNNNNNN	B1H Zhu et al.(2011) Poxm_SOLEXA_5_FBgn0003129	0.744	0.744
PAX1 M11207_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX1_B	0.744	0.744
PAX1 M05688_2.00	Homo sapiens	BCRNTSAWGCGTGACSN	NSGTCACGCWTSANYGV	SELEX Yin et al.(2017) PAX1_eDBD_Methyl-HT-SELEX	0.744	0.744
PAX7 M00346_2.00	Homo sapiens	NGTYAYGSHN	NDSCRTRACN	PBM Barrera et al.(2016) PAX7_REF	0.736	0.736
PAX9 M03444_2.00	Homo sapiens	NKCANTSAWGCGTGACS	SGTCACGCWTSANTGMN	SELEX Jolma et al.(2013) PAX9_1	0.736	0.736
PAX9 M05689_2.00	Homo sapiens	BHRNYSRDSCGTRACSN	NSGTYACGSHYSRNYDV	SELEX Yin et al.(2017) PAX9_eDBD_HT-SELEX	0.736	0.736
PAX9 M05690_2.00	Homo sapiens	BCRNTSAWSCGYGACNN	NNGTCRCGSWTSANYGV	SELEX Yin et al.(2017) PAX9_eDBD_Methyl-HT-SELEX	0.736	0.736
Poxn M03946_2.00	Drosophila melanogaster	DGCGTGACSGTCACGSY	RSCGTGACSGTCACGCH	SELEX Nitta et al.(2015) Poxn_1	0.728	0.728
Poxn M03947_2.00	Drosophila melanogaster	RSCGKGACSGTTMCGSW	WSCGKAACSGTCMCGSY	SELEX Nitta et al.(2015) Poxn_2	0.728	0.728
Poxn M03948_2.00	Drosophila melanogaster	NCGTTCCGGAACGD	HCGTTCCGGAACGN	SELEX Nitta et al.(2015) Poxn_3	0.728	0.728
Poxn M06437_2.00	Drosophila melanogaster	RSCGTGACG	CGTCACGSY	B1H Zhu et al.(2011) Poxn_SOLEXA_5_FBgn0003130	0.728	0.728
pax9 M11204_2.00	Danio rerio	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX9_B	0.728	0.728
PAX7 M00345_2.00	Homo sapiens	NSGTCACGSN	NSCGTGACSN	PBM Barrera et al.(2016) PAX7_P112L	0.728	0.728
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSPFOP00000003822	Paired box	19	143	GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIADYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIR

Links
Other Paired box family TFs
Other *Poecilia formosa* TFs

646 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACYPI007962	Acyrthosiphon pisum	ACYPI007962	N	0.000
AAEL003602	Aedes aegypti	AAEL003602	N	0.000
AALB005765	Anopheles albimanus	AALB005765	N	0.000
AARA007771	Anopheles arabiensis	AARA007771	N	0.000
AATE006171	Anopheles atroparvus	AATE006171	N	0.000
ACHR001790	Anopheles christyi	ACHR001790	N	0.000
ACUA006984	Anopheles culicifacies	ACUA006984	N	0.000
ADIR008055	Anopheles dirus	ADIR008055	N	0.000
AEPI001699	Anopheles epiroticus	AEPI001699	N	0.000
AFAF012484	Anopheles farauti	AFAF012484	N	0.000
AFUN008026	Anopheles funestus	AFUN008026	N	0.000
AGAP007109	Anopheles gambiae	AGAP007109	N	0.000
AMAM024265	Anopheles maculatus	AMAM024265	N	0.000
AMEC019433	Anopheles melas	AMEC019433	N	0.000
AMEC009079	Anopheles melas	AMEC009079	N	0.000
AMEM014597	Anopheles merus	AMEM014597	N	0.000
AMIN011248	Anopheles minimus	AMIN011248	N	0.000
AQUA002036	Anopheles quadriannulatus	AQUA002036	N	0.000
ASIS021384	Anopheles sinensis	ASIS021384	N	0.000
ASTEI06883	Anopheles stephensi	ASTEI06883	N	0.000
GB51047	Apis mellifera	GB51047	N	0.000
ACEP12467	Atta cephalotes	ACEP12467	N	0.000
BGIBMGA012741	Bombyx mori	BGIBMGA012741	N	0.000
fgenesh2_pg.scaffold_282000018	Branchiostoma floridae	fgenesh2_pg.scaffold_282000018	N	0.000
Cflo_02233--XP_001120809.1_APIME	Camponotus floridanus	Cflo_02233--XP_001120809.1_APIME	N	0.000
CapteG221467	Capitella teleta	CapteG221467	N	0.000
CLEC010738	Cimex lectularius	CLEC010738	N	0.000
CpipJ_CPIJ004963	Culex pipiens	CpipJ_CPIJ004963	N	0.000
CPIJ004963	Culex quinquefasciatus	CPIJ004963	N	0.000
KGM_11907	Danaus plexippus	KGM_11907	N	0.000
GF23998	Drosophila ananassae	FBgn0100992	N	0.000
GG15296	Drosophila erecta	FBgn0107548	N	0.000
GH14523	Drosophila grimshawi	FBgn0121999	N	0.000
GH25273	Drosophila grimshawi	FBgn0132728	N	0.000
CG13287	Drosophila melanogaster	FBgn0035643	N	0.000
GI13299	Drosophila mojavensis	FBgn0136056	N	0.000
GL21034	Drosophila persimilis	FBgn0158629	N	0.000
GA12173	Drosophila pseudoobscura	FBgn0072221	N	0.000
GM14727	Drosophila sechellia	FBgn0169648	N	0.000
GD13907	Drosophila simulans	FBgn0185603	N	0.000
GJ12068	Drosophila virilis	FBgn0199320	N	0.000
GK16660	Drosophila willistoni	FBgn0218662	N	0.000
GE21517	Drosophila yakuba	FBgn0238774	N	0.000
ENSGMOG00000016370	Gadus morhua	ENSGMOG00000016370	N	0.000
HHAL003310-PA	Halyomorpha halys	HHAL003310-PA	N	0.000
Hsal_04139--XP_001120809.1_APIME	Harpegnathos saltator	Hsal_04139--XP_001120809.1_APIME	N	0.000
HMEL017852	Heliconius melpomene	HMEL017852	N	0.000
ISCW009928	Ixodes scapularis	ISCW009928	N	0.000
LDEC001191	Leptinotarsa decemlineata	LDEC001191	N	0.000
LotgiG69958	Lottia gigantea	LotgiG69958	N	0.000
LCUP008185	Lucilia cuprina	LCUP008185	N	0.000
MCINX010301	Melitaea cinxia	MCINX010301	N	0.000
MDOA007546	Musca domestica	MDOA007546	N	0.000
NV17890	Nasonia vitripennis	NV17890	N	0.000
Ocbimv22006527m.g	Octopus bimaculoides	Ocbimv22006527m.g	N	0.000
PHUM271650	Pediculus humanus	PHUM271650	N	0.000
PPAI006396	Phlebotomus papatasi	PPAI006396	N	0.000
Sakowv30017448m.g	Saccoglossus kowalevskii	Sakowv30017448m.g	N	0.000
SINV25005	Solenopsis invicta	SINV25005	N	0.000
SMAR006435	Strigamia maritima	SMAR006435	N	0.000
tetur11g03890	Tetranychus urticae	tetur11g03890	N	0.000
TC013073	Tribolium castaneum	TC013073	N	0.000
L798_05037	Zootermopsis nevadensis	L798_05037	N	0.000

ENSPFOG00000003702 (Poecilia formosa) Paired box

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

646 Related TFs

ENSPFOG00000003702 **(Poecilia formosa)
Paired box**