ENSSSCG00000001943 (Sus scrofa)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSSSCG00000001943 T311814_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		1.000 1.000
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		1.000 1.000
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		1.000 1.000
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.976 0.976
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.960 0.960
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.960 0.960
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.960 0.960
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.960 0.960
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.880 0.880
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.880 0.880
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.880 0.880
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.752 0.752
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.744 0.744
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.736 0.736
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.736 0.736
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.736 0.736
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.736 0.736
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.736 0.736
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.736 0.736
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.736 0.736
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.736 0.736
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.736 0.736
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.736 0.736
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.736 0.736
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.736 0.736
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.736 0.736
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.736 0.736
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.736 0.736
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.736 0.736
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.736 0.736
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.720 0.720
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.720 0.720
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.720 0.720
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.720 0.720
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.720 0.720
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.712 0.712
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.712 0.712
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000002124 Paired box 34 158

Links

Other Paired box family TFs
Other Sus scrofa TFs

518 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_067850 Acremonium chrysogenum ACRE_067850 I 0.000
M437DRAFT_67933 Aureobasidium melanogenum M437DRAFT_67933 I 0.000
M438DRAFT_155623 Aureobasidium pullulans M438DRAFT_155623 I 0.000
AUEXF2481DRAFT_374368 Aureobasidium subglaciale AUEXF2481DRAFT_374368 I 0.000
BBA_09189 Beauveria bassiana BBA_09189 I 0.000
BGHDH14_bgh05094 Blumeria graminis BGHDH14_bgh05094 I 0.000
Bcin08g00160 Botrytis cinerea Bcin08g00160 I 0.000
PVAR5_1180 Byssochlamys spectabilis PVAR5_1180 I 0.000
PV04_09032 Capronia semiimmersa PV04_09032 I 0.000
CHGG_07364 Chaetomium globosum CHGG_07364 I 0.000
CTHT_0068480 Chaetomium thermophilum CTHT_0068480 I 0.000
A1O5_06915 Cladophialophora psammophila A1O5_06915 N 0.000
CPUR_08028 Claviceps purpurea CPUR_08028 I 0.000
CFIO01_10198 Colletotrichum fioriniae CFIO01_10198 I 0.000
GLRG_01145 Colletotrichum graminicola GLRG_01145 I 0.000
CH063_08735 Colletotrichum higginsianum CH063_08735 I 0.000
CSUB01_05898 Colletotrichum sublineola CSUB01_05898 I 0.000
CCM_09080 Cordyceps militaris CCM_09080 I 0.000
estExt_Genewise1Plus.C_13371 Cryphonectria parasitica estExt_Genewise1Plus.C_13371 I 0.000
DOTSEDRAFT_68376 Dothistroma septosporum DOTSEDRAFT_68376 I 0.000
EV44_g6268 Erysiphe necator EV44_g6268 I 0.000
NechaG22260 Fusarium solani NechaG22260 I 0.000
GGTG_06006 Gaeumannomyces graminis GGTG_06006 I 0.000
CMQ_7699 Grosmannia clavigera CMQ_7699 I 0.000
MGG_05343 Magnaporthe oryzae MGG_05343 I 0.000
MAPG_04263 Magnaporthe poae MAPG_04263 I 0.000
MBM_09456 Marssonina brunnea MBM_09456 I 0.000
MAC_05572 Metarhizium acridum MAC_05572 I 0.000
MAM_04875 Metarhizium album MAM_04875 I 0.000
MANI_011912 Metarhizium anisopliae MANI_011912 I 0.000
MBR_05015 Metarhizium brunneum MBR_05015 I 0.000
MGU_01655 Metarhizium guizhouense MGU_01655 I 0.000
MAJ_06898 Metarhizium majus MAJ_06898 I 0.000
X797_001512 Metarhizium robertsii X797_001512 I 0.000
MYCTH_2301920 Myceliophthora thermophila MYCTH_2301920 I 0.000
estExt_Genewise1.C_12176 Mycosphaerella fijiensis estExt_Genewise1.C_12176 I 0.000
estExt_fgenesh1_pg.C_chr_10960 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_10960 I 0.000
gw1.14.468.1 Nectria haematococca gw1.14.468.1 I 0.000
col-26 Neurospora crassa NCU07788 D 0.000
estExt_Genewise1Plus.C_140234 Neurospora discreta estExt_Genewise1Plus.C_140234 I 0.000
NEUTE1DRAFT_59081 Neurospora tetrasperma NEUTE1DRAFT_59081 I 0.000
OIDMADRAFT_45538 Oidiodendron maius OIDMADRAFT_45538 I 0.000
OCS_01944 Ophiocordyceps sinensis OCS_01944 I 0.000
F503_04220 Ophiostoma piceae uamh F503_04220 I 0.000
PFICI_10998 Pestalotiopsis fici PFICI_10998 I 0.000
PODANS_2_4060 Podospora anserina PODANS_2_4060 I 0.000
MYCFIDRAFT_127068 Pseudocercospora fijiensis MYCFIDRAFT_127068 I 0.000
GMDG_01905 Pseudogymnoascus destructans GMDG_01905 I 0.000
V499_05963 Pseudogymnoascus pannorum V499_05963 I 0.000
SAPIO_CDS0393 Scedosporium apiospermum SAPIO_CDS0393 I 0.000
SBOR_6099 Sclerotinia borealis SBOR_6099 I 0.000
SMAC_08231 Sordaria macrospora SMAC_08231 I 0.000
SEPMUDRAFT_146091 Sphaerulina musiva SEPMUDRAFT_146091 I 0.000
S40288_10011 Stachybotrys chartarum S40288_10011 N 0.000
S40288_01569 Stachybotrys chartarum S40288_01569 I 0.000
S40285_00097 Stachybotrys chlorohalonata S40285_00097 I 0.000
THITE_2108095 Thielavia terrestris THITE_2108095 I 0.000
VHEMI08540 Torrubiella hemipterigena VHEMI08540 I 0.000
TRIATDRAFT_11573 Trichoderma atroviride TRIATDRAFT_11573 I 0.000
TRIREDRAFT_52368 Trichoderma reesei TRIREDRAFT_52368 I 0.000
TRIVIDRAFT_156582 Trichoderma virens TRIVIDRAFT_156582 I 0.000
UV8b_5300 Ustilaginoidea virens UV8b_5300 I 0.000
VDBG_09402 Verticillium albo atrum VDBG_09402 I 0.000
VDBG_09402 Verticillium alfalfae VDBG_09402 I 0.000
VDAG_04640 Verticillium dahliae VDAG_04640 I 0.000
Mycgr3G107320 Zymoseptoria tritici Mycgr3G107320 I 0.000