GB52620 (Apis mellifera)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 GB52620 T311910_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.912 0.912
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.912 0.912
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.912 0.912
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.904 0.904
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.904 0.904
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.904 0.904
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.904 0.904
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.896 0.896
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.896 0.896
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.896 0.896
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.880 0.880
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.736 0.736
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.736 0.736
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.736 0.736
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.736 0.736
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.736 0.736
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.736 0.736
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.736 0.736
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.736 0.736
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.736 0.736
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.736 0.736
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.736 0.736
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.736 0.736
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.736 0.736
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.736 0.736
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.736 0.736
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.736 0.736
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.736 0.736
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.728 0.728
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.720 0.720
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.720 0.720
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.720 0.720
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.720 0.720
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.720 0.720
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.720 0.720
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.704 0.704
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.704 0.704
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GB52620-PA Paired box 51 175

Links

Other Paired box family TFs
Other Apis mellifera TFs

477 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I
ABI4 Arabidopsis lyrata Al_scaffold_0004_2621 I
ABI4 Arabidopsis thaliana AT2G40220 I
Bostr.23794s0036 Boechera stricta Bostr.23794s0036 I
Bo3g034810 Brassica oleracea Bo3g034810 I
Bo4g025410 Brassica oleracea Bo4g025410 I
Bra000178 Brassica rapa Bra000178 I
Bra004978 Brassica rapa Bra004978 I
Cagra.7053s0005 Capsella grandiflora Cagra.7053s0005 I
Carubv10025253m.g Capsella rubella Carubv10025253m.g I
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I
Ca_12465 Cicer arietinum Ca_12465 I
Cla006708 Citrullus lanatus Cla006708 I
Ciclev10033578m.g Citrus clementina Ciclev10033578m.g I
orange1.1g038194m.g Citrus sinensis orange1.1g038194m.g I
Thhalv10017614m.g Eutrema salsugineum Thhalv10017614m.g I
gene21003-v1.0-hybrid Fragaria vesca gene21003-v1.0-hybrid I
GLYMA14G06290 Glycine max GLYMA14G06290 I
GLYMA02G43240 Glycine max GLYMA02G43240 I
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I
LPERR05G10140 Leersia perrieri LPERR05G10140 I
Lus10040944.g Linum usitatissimum Lus10040944.g I
Lus10009834.g Linum usitatissimum Lus10009834.g I
chr2.CM0002.60.nc Lotus japonicus chr2.CM0002.60.nc I
MDP0000628484 Malus domestica MDP0000628484 I
MDP0000225376 Malus domestica MDP0000225376 I
cassava20838.m1 Manihot esculenta cassava20838.m1 I
cassava41265.m1 Manihot esculenta cassava41265.m1 I
MTR_5g082950 Medicago truncatula MTR_5g082950 I
mgf024416m Mimulus guttatus mgf024416m I
GSMUA_Achr3G10100_001 Musa acuminata GSMUA_Achr3G10100_001 I
GSMUA_Achr5G07400_001 Musa acuminata GSMUA_Achr5G07400_001 I
GSMUA_Achr9G18060_001 Musa acuminata GSMUA_Achr9G18060_001 I
ORGLA05G0109500 Oryza glaberrima ORGLA05G0109500 I
OGLUM05G13600 Oryza glumaepatula OGLUM05G13600 I
BGIOSGA018232 Oryza indica BGIOSGA018232 I
OMERI05G11540 Oryza meridionalis OMERI05G11540 I
ONIVA05G13490 Oryza nivara ONIVA05G13490 I
OPUNC05G11000 Oryza punctata OPUNC05G11000 I
ABI4 Oryza sativa OS05G0351200 I
Pavir.J38620 Panicum virgatum Pavir.J38620 I
Pavir.J33237 Panicum virgatum Pavir.J33237 I
Pavir.J29572 Panicum virgatum Pavir.J29572 I
POPTR_0010s19370 Populus trichocarpa POPTR_0010s19370 I
POPTR_0008s07120 Populus trichocarpa POPTR_0008s07120 I
Pm018953 Prunus mume Pm018953 I
PRUPE_ppa015230mg Prunus persica PRUPE_ppa015230mg I
29814.m000739 Ricinus communis 29814.m000739 I
SapurV1A.0061s0480 Salix purpurea SapurV1A.0061s0480 I
SapurV1A.0650s0090 Salix purpurea SapurV1A.0650s0090 I
SELMODRAFT_427925 Selaginella moellendorffii SELMODRAFT_427925 I
SELMODRAFT_420500 Selaginella moellendorffii SELMODRAFT_420500 I
PGSC0003DMG400041883 Solanum tuberosum PGSC0003DMG400041883 I
Sb09g016550 Sorghum bicolor Sb09g016550 I
TCM_042471 Theobroma cacao TCM_042471 I
ABI4 Vitis vinifera VIT_13s0067g01400 I
abi4 Zea mays GRMZM2G093595 D