lcor (Danio rerio)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSDARG00000100908 T313541_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.978 0.978
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		0.933 0.933
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.933 0.933
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.889 0.889
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.822 0.822
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.800 0.800
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000140998 Pipsqueak 482 527

Links

Other Pipsqueak family TFs
Other Danio rerio TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000678 Ailuropoda melanoleuca ENSAMEG00000000678 I 0.000
ENSAMEG00000001843 Ailuropoda melanoleuca ENSAMEG00000001843 I 0.000
ENSAMEG00000004990 Ailuropoda melanoleuca ENSAMEG00000004990 I 0.000
ENSAMEG00000005885 Ailuropoda melanoleuca ENSAMEG00000005885 I 0.000
Alligator_sinensis_CCG014475.1 Alligator sinensis Alligator_sinensis_CCG014475.1 I 0.000
ENSAPLG00000007152 Anas platyrhynchos ENSAPLG00000007152 I 0.000
ENSAPLG00000008679 Anas platyrhynchos ENSAPLG00000008679 I 0.000
ENSAPLG00000011303 Anas platyrhynchos ENSAPLG00000011303 I 0.000
ENSAPLG00000013604 Anas platyrhynchos ENSAPLG00000013604 I 0.000
HOXB9 Anolis carolinensis ENSACAG00000006412 I 0.000
ENSACAG00000007286 Anolis carolinensis ENSACAG00000007286 I 0.000
ENSACAG00000010895 Anolis carolinensis ENSACAG00000010895 I 0.000
Afo_R003419 Aptenodytes forsteri Afo_R003419 I 0.000
Afo_R006607 Aptenodytes forsteri Afo_R006607 I 0.000
ENSAMXG00000000614 Astyanax mexicanus ENSAMXG00000000614 I 0.000
ENSAMXG00000009380 Astyanax mexicanus ENSAMXG00000009380 I 0.000
ENSAMXG00000015967 Astyanax mexicanus ENSAMXG00000015967 I 0.000
ENSAMXG00000024682 Astyanax mexicanus ENSAMXG00000024682 I 0.000
ENSBTAP00000021336-D3 Bos grunniens ENSBTAP00000021336-D3 I 0.000
HOXC9 Bos taurus ENSBTAG00000005606 I 0.000
HOXD9 Bos taurus ENSBTAG00000016033 I 0.000
ENSBTAG00000025009 Bos taurus ENSBTAG00000025009 I 0.000
Brh_R010177 Buceros rhinoceros Brh_R010177 I 0.000
Brh_R010431 Buceros rhinoceros Brh_R010431 I 0.000
HOXB9 Callithrix jacchus ENSCJAG00000007442 I 0.000
ENSCJAG00000008096 Callithrix jacchus ENSCJAG00000008096 I 0.000
HOXD9 Callithrix jacchus ENSCJAG00000008274 I 0.000
HOXC9 Callithrix jacchus ENSCJAG00000018819 I 0.000
Aan_R001088 Calypte anna Aan_R001088 I 0.000
Aan_R012456 Calypte anna Aan_R012456 I 0.000
ENSCAFG00000002961 Canis familiaris ENSCAFG00000002961 I 0.000
HOXB9 Canis familiaris ENSCAFG00000016867 I 0.000
ENSCPOG00000011365 Cavia porcellus ENSCPOG00000011365 I 0.000
HOXD9 Cavia porcellus ENSCPOG00000015006 I 0.000
ENSCPOG00000024184 Cavia porcellus ENSCPOG00000024184 I 0.000
Cmyd_10015814 Chelonia mydas Cmyd_10015814 I 0.000
Cmyd_10020955 Chelonia mydas Cmyd_10020955 I 0.000
ENSCSAG00000002521 Chlorocebus sabaeus ENSCSAG00000002521 I 0.000
ENSCSAG00000005453 Chlorocebus sabaeus ENSCSAG00000005453 I 0.000
ENSCSAG00000014297 Chlorocebus sabaeus ENSCSAG00000014297 I 0.000
ENSCSAG00000014441 Chlorocebus sabaeus ENSCSAG00000014441 I 0.000
hoxb9a Danio rerio ENSDARG00000056023 I 0.000
hoxa9b Danio rerio ENSDARG00000056819 I 0.000
hoxc9a Danio rerio ENSDARG00000092809 I 0.000
hoxa9a Danio rerio ENSDARG00000105013 I 0.000
HOXB9 Dasypus novemcinctus ENSDNOG00000024386 I 0.000
HOXC9 Dasypus novemcinctus ENSDNOG00000035825 I 0.000
ENSDNOG00000043901 Dasypus novemcinctus ENSDNOG00000043901 I 0.000
Hoxa9 Dipodomys ordii ENSDORG00000006323 I 0.000
ENSDORG00000006994 Dipodomys ordii ENSDORG00000006994 I 0.000
ENSDORG00000007908 Dipodomys ordii ENSDORG00000007908 I 0.000
HOXD9 Echinops telfairi ENSETEG00000011069 I 0.000
HOXC9 Equus caballus ENSECAG00000000726 I 0.000
ENSECAG00000002772 Equus caballus ENSECAG00000002772 I 0.000
ENSECAG00000008431 Equus caballus ENSECAG00000008431 I 0.000
HOXD9 Equus caballus ENSECAG00000021845 I 0.000
HOXD9 Erinaceus europaeus ENSEEUG00000003473 I 0.000
ENSEEUG00000009872 Erinaceus europaeus ENSEEUG00000009872 I 0.000
ENSFCAG00000007944 Felis catus ENSFCAG00000007944 I 0.000
ENSFCAG00000013346 Felis catus ENSFCAG00000013346 I 0.000
HOXB9 Felis catus ENSFCAG00000029804 I 0.000
HOXC9 Felis catus ENSFCAG00000031037 I 0.000
ENSFALG00000003149 Ficedula albicollis ENSFALG00000003149 I 0.000
ENSFALG00000009435 Ficedula albicollis ENSFALG00000009435 I 0.000
ENSFALG00000014318 Ficedula albicollis ENSFALG00000014318 I 0.000
ENSGMOG00000012111 Gadus morhua ENSGMOG00000012111 I 0.000
ENSGMOG00000013861 Gadus morhua ENSGMOG00000013861 I 0.000
ENSGMOG00000017882 Gadus morhua ENSGMOG00000017882 I 0.000
ENSGALG00000019640 Gallus gallus ENSGALG00000019640 I 0.000
ENSGALG00000023132 Gallus gallus ENSGALG00000023132 I 0.000
ENSGALG00000026586 Gallus gallus ENSGALG00000026586 I 0.000
HOXD9 Gallus gallus ENSGALG00000027513 I 0.000
ENSGALG00000028983 Gallus gallus ENSGALG00000028983 I 0.000
ENSGACG00000007123 Gasterosteus aculeatus ENSGACG00000007123 I 0.000
hoxa9b Gasterosteus aculeatus ENSGACG00000008310 I 0.000
hoxc9a Gasterosteus aculeatus ENSGACG00000009396 I 0.000
hoxa9b Gasterosteus aculeatus ENSGACG00000011902 I 0.000
Gfo_R015839 Geospiza fortis Gfo_R015839 I 0.000
ENSGGOG00000002222 Gorilla gorilla ENSGGOG00000002222 I 0.000
HOXC9 Gorilla gorilla ENSGGOG00000006282 I 0.000
HOXA9 Homo sapiens ENSG00000078399 D 0.000
HOXD9 Homo sapiens ENSG00000128709 D 0.000
HOXB9 Homo sapiens ENSG00000170689 D 0.000
HOXC9 Homo sapiens ENSG00000180806 D 0.000
ENSSTOG00000009741 Ictidomys tridecemlineatus ENSSTOG00000009741 I 0.000
ENSSTOG00000028613 Ictidomys tridecemlineatus ENSSTOG00000028613 I 0.000
ENSLACG00000015129 Latimeria chalumnae ENSLACG00000015129 I 0.000
ENSLACG00000016678 Latimeria chalumnae ENSLACG00000016678 I 0.000
ENSLACG00000017369 Latimeria chalumnae ENSLACG00000017369 I 0.000
ENSLOCG00000013453 Lepisosteus oculatus ENSLOCG00000013453 I 0.000
HOXC9 Loxodonta africana ENSLAFG00000002366 I 0.000
ENSLAFG00000008970 Loxodonta africana ENSLAFG00000008970 I 0.000
HOXD9 Loxodonta africana ENSLAFG00000011494 I 0.000
HOXB9 Loxodonta africana ENSLAFG00000013600 I 0.000
ENSP00000309439 Macaca fascicularis ENSP00000309439 I 0.000
ENSP00000343619 Macaca fascicularis ENSP00000343619 I 0.000
ENSMMUG00000000926 Macaca mulatta ENSMMUG00000000926 I 0.000
HOXA10 Macaca mulatta ENSMMUG00000013459 I 0.000
ENSMMUG00000020869 Macaca mulatta ENSMMUG00000020869 I 0.000
HOXD9 Macaca mulatta ENSMMUG00000032599 I 0.000
ENSMEUG00000006605 Macropus eugenii ENSMEUG00000006605 I 0.000
ENSMEUG00000012377 Macropus eugenii ENSMEUG00000012377 I 0.000
ENSMGAG00000017085 Meleagris gallopavo ENSMGAG00000017085 I 0.000
ENSMICG00000000497 Microcebus murinus ENSMICG00000000497 I 0.000
ENSMICG00000002192 Microcebus murinus ENSMICG00000002192 I 0.000
ENSMICG00000007541 Microcebus murinus ENSMICG00000007541 I 0.000
HOXC9 Microcebus murinus ENSMICG00000011714 I 0.000
HOXD9 Monodelphis domestica ENSMODG00000009591 I 0.000
HOXB9 Monodelphis domestica ENSMODG00000012329 I 0.000
ENSMPUG00000004809 Mustela putorius furo ENSMPUG00000004809 I 0.000
ENSMPUG00000005862 Mustela putorius furo ENSMPUG00000005862 I 0.000
ENSMPUG00000014053 Mustela putorius furo ENSMPUG00000014053 I 0.000
ENSMPUG00000015330 Mustela putorius furo ENSMPUG00000015330 I 0.000
Hoxb9 Mus musculus ENSMUSG00000020875 D 0.000
Hoxa9 Mus musculus ENSMUSG00000038227 D 0.000
Hoxd9 Mus musculus ENSMUSG00000043342 D 0.000
Myotis_brandtii_HOXA9_10034032 Myotis brandtii Myotis_brandtii_HOXA9_10034032 I 0.000
Myotis_brandtii_HOXB9_10017023 Myotis brandtii Myotis_brandtii_HOXB9_10017023 I 0.000
HOXC9 Myotis lucifugus ENSMLUG00000000483 I 0.000
HOXB9 Myotis lucifugus ENSMLUG00000011677 I 0.000
ENSNLEG00000006011 Nomascus leucogenys ENSNLEG00000006011 I 0.000
ENSNLEG00000014992 Nomascus leucogenys ENSNLEG00000014992 I 0.000
ENSNLEG00000017678 Nomascus leucogenys ENSNLEG00000017678 I 0.000
ENSOPRG00000004049 Ochotona princeps ENSOPRG00000004049 I 0.000
ENSOPRG00000010452 Ochotona princeps ENSOPRG00000010452 I 0.000
Ogr11833 Ophisaurus gracilis Ogr11833 I 0.000
Ogr12573 Ophisaurus gracilis Ogr12573 I 0.000
ENSONIG00000001343 Oreochromis niloticus ENSONIG00000001343 I 0.000
ENSONIG00000002965 Oreochromis niloticus ENSONIG00000002965 I 0.000
ENSONIG00000004597 Oreochromis niloticus ENSONIG00000004597 I 0.000
ENSONIG00000006179 Oreochromis niloticus ENSONIG00000006179 I 0.000
ENSONIG00000012238 Oreochromis niloticus ENSONIG00000012238 I 0.000
HOXB9 Ornithorhynchus anatinus ENSOANG00000005338 I 0.000
ENSOANG00000008615 Ornithorhynchus anatinus ENSOANG00000008615 I 0.000
ENSOANG00000009170 Ornithorhynchus anatinus ENSOANG00000009170 I 0.000
HOXC9 Oryctolagus cuniculus ENSOCUG00000001160 I 0.000
ENSOCUG00000020585 Oryctolagus cuniculus ENSOCUG00000020585 I 0.000
HOXD9 Oryctolagus cuniculus ENSOCUG00000023956 I 0.000
HOXB9 Oryctolagus cuniculus ENSOCUG00000027316 I 0.000
ENSORLG00000001349 Oryzias latipes ENSORLG00000001349 I 0.000
hoxa9 Oryzias latipes ENSORLG00000005025 I 0.000
hoxa9b Oryzias latipes ENSORLG00000007620 I 0.000
hoxc8 Oryzias latipes ENSORLG00000007935 I 0.000
hoxb9a Oryzias latipes ENSORLG00000017035 I 0.000
HOXC9 Otolemur garnettii ENSOGAG00000003616 I 0.000
HOXB9 Otolemur garnettii ENSOGAG00000008668 I 0.000
ENSOGAG00000015000 Otolemur garnettii ENSOGAG00000015000 I 0.000
HOXD9 Otolemur garnettii ENSOGAG00000015697 I 0.000
ENSOARG00000006872 Ovis aries ENSOARG00000006872 I 0.000
ENSOARG00000009680 Ovis aries ENSOARG00000009680 I 0.000
ENSOARG00000016319 Ovis aries ENSOARG00000016319 I 0.000
ENSOARG00000017504 Ovis aries ENSOARG00000017504 I 0.000
HOXC9 Pan troglodytes ENSPTRG00000005029 I 0.000
HOXB9 Pan troglodytes ENSPTRG00000009358 I 0.000
HOXA9 Pan troglodytes ENSPTRG00000019018 I 0.000
HOXD9 Pan troglodytes ENSPTRG00000029132 I 0.000
ENSPANG00000001061 Papio anubis ENSPANG00000001061 I 0.000
ENSPANG00000014167 Papio anubis ENSPANG00000014167 I 0.000
ENSPANG00000022896 Papio anubis ENSPANG00000022896 I 0.000
ENSPANG00000025913 Papio anubis ENSPANG00000025913 I 0.000
ENSPSIG00000002761 Pelodiscus sinensis ENSPSIG00000002761 I 0.000
ENSPSIG00000004824 Pelodiscus sinensis ENSPSIG00000004824 I 0.000
ENSPSIG00000007113 Pelodiscus sinensis ENSPSIG00000007113 I 0.000
ENSPFOG00000002585 Poecilia formosa ENSPFOG00000002585 I 0.000
ENSPFOG00000003793 Poecilia formosa ENSPFOG00000003793 I 0.000
ENSPFOG00000003870 Poecilia formosa ENSPFOG00000003870 I 0.000
ENSPFOG00000022354 Poecilia formosa ENSPFOG00000022354 I 0.000
Pvit_02707 Pogona vitticeps Pvit_02707 I 0.000
Pvit_18295 Pogona vitticeps Pvit_18295 I 0.000
ENSPPYG00000004592 Pongo abelii ENSPPYG00000004592 I 0.000
ENSPPYG00000008902 Pongo abelii ENSPPYG00000008902 I 0.000
ENSPPYG00000012959 Pongo abelii ENSPPYG00000012959 I 0.000
ENSPPYG00000017700 Pongo abelii ENSPPYG00000017700 I 0.000
HOXB9 Procavia capensis ENSPCAG00000006263 I 0.000
HOXC9 Procavia capensis ENSPCAG00000010970 I 0.000
ENSPVAG00000002497 Pteropus vampyrus ENSPVAG00000002497 I 0.000
HOXC9 Pteropus vampyrus ENSPVAG00000011039 I 0.000
Hoxd9 Rattus norvegicus ENSRNOG00000001580 I 0.000
Hoxb9 Rattus norvegicus ENSRNOG00000007573 I 0.000
Hoxc9 Rattus norvegicus ENSRNOG00000016199 I 0.000
LOC103692128 Rattus norvegicus ENSRNOG00000047484 I 0.000
Hoxa9 Rattus norvegicus ENSRNOG00000048146 I 0.000
LOC103689925 Rattus norvegicus ENSRNOG00000061871 I 0.000
ENSSHAG00000006807 Sarcophilus harrisii ENSSHAG00000006807 I 0.000
ENSSHAG00000012684 Sarcophilus harrisii ENSSHAG00000012684 I 0.000
ENSSHAG00000016017 Sarcophilus harrisii ENSSHAG00000016017 I 0.000
ENSSARG00000005576 Sorex araneus ENSSARG00000005576 I 0.000
SPU_002633 Strongylocentrotus purpuratus SPU_002633 I 0.000
HOXD9 Sus scrofa ENSSSCG00000015982 I 0.000
ENSSSCG00000016700 Sus scrofa ENSSSCG00000016700 I 0.000
ENSSSCG00000028997 Sus scrofa ENSSSCG00000028997 I 0.000
ENSTGUG00000002921 Taeniopygia guttata ENSTGUG00000002921 I 0.000
ENSTGUG00000003448 Taeniopygia guttata ENSTGUG00000003448 I 0.000
chrna1 Takifugu rubripes ENSTRUG00000008738 I 0.000
hoxa9b Takifugu rubripes ENSTRUG00000009562 I 0.000
ENSTRUG00000015327 Takifugu rubripes ENSTRUG00000015327 I 0.000
ENSTRUG00000015974 Takifugu rubripes ENSTRUG00000015974 I 0.000
ENSTNIG00000001582 Tetraodon nigroviridis ENSTNIG00000001582 I 0.000
hoxa9b Tetraodon nigroviridis ENSTNIG00000001769 I 0.000
hoxa9b Tetraodon nigroviridis ENSTNIG00000001779 I 0.000
ENSTBEG00000011012 Tupaia belangeri ENSTBEG00000011012 I 0.000
HOXB9 Tursiops truncatus ENSTTRG00000012262 I 0.000
Tal_R005272 Tyto alba Tal_R005272 I 0.000
hoxc9.S Xenopus laevis XB-GENE-6466551 I 0.000
hoxa10.L Xenopus laevis XB-GENE-6486002 I 0.000
hoxa9.S Xenopus laevis XB-GENE-864813 I 0.000
hoxb9 Xenopus tropicalis XB-GENE-963094 I 0.000
ENSXMAG00000001057 Xiphophorus maculatus ENSXMAG00000001057 I 0.000
ENSXMAG00000006762 Xiphophorus maculatus ENSXMAG00000006762 I 0.000
ENSXMAG00000013906 Xiphophorus maculatus ENSXMAG00000013906 I 0.000