ENSMGAG00000009953 (Meleagris gallopavo)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSMGAG00000009953 T313571_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00		 Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02433_2.00 Pipsqueak 51 96

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000010302 Pipsqueak 350 395
ENSMGAP00000018018 Pipsqueak 344 389

Links

Other Pipsqueak family TFs
Other Meleagris gallopavo TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M438DRAFT_343467 Aureobasidium pullulans M438DRAFT_343467 N 0.000
BAUCODRAFT_144905 Baudoinia compniacensis BAUCODRAFT_144905 N 0.000
DOTSEDRAFT_67992 Dothistroma septosporum DOTSEDRAFT_67992 N 0.000
estExt_Genewise1Plus.C_13626 Mycosphaerella fijiensis estExt_Genewise1Plus.C_13626 N 0.000
estExt_Genewise1.C_chr_40669 Mycosphaerella graminicola estExt_Genewise1.C_chr_40669 N 0.000
MYCFIDRAFT_55893 Pseudocercospora fijiensis MYCFIDRAFT_55893 N 0.000
SEPMUDRAFT_146766 Sphaerulina musiva SEPMUDRAFT_146766 N 0.000
Mycgr3G57911 Zymoseptoria tritici Mycgr3G57911 N 0.000