CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

RAP1 *(Saccharomyces cerevisiae)* Rap1
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF09197 (Rap1-DNA-bind)	IPR015280	YNL216W	T316925_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RAP1 M00378_2.00	Saccharomyces cerevisiae	RGRTGKAYGG	CCRTMCAYCY	PBM Berger et al.(2006) Rap1	(Direct)	(Direct)
RAP1 M01564_2.00	Saccharomyces cerevisiae	NGGTGYVNDD	HHNBRCACCN	PBM Zhu et al.(2009) Rap1	(Direct)	(Direct)
RAP1 M07493_2.00	Saccharomyces cerevisiae	TGTWYGGGTG	CACCCRWACA	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0359.1	(Direct)	(Direct)
RAP1 M07556_2.00	Saccharomyces cerevisiae	RTGYRYGGGTG	CACCCRYRCAY	ChIP-exo Rhee et al.(2011) Rap1_1	(Direct)	(Direct)
RAP1 M07557_2.00	Saccharomyces cerevisiae	GTGTGKGTGTG	CACACMCACAC	ChIP-exo Rhee et al.(2011) Rap1_2	(Direct)	(Direct)
RAP1 M07558_2.00	Saccharomyces cerevisiae	GGTGTGGTGTG	CACACCACACC	ChIP-exo Rhee et al.(2011) Rap1_3	(Direct)	(Direct)
RAP1 M08599_2.00	Saccharomyces cerevisiae	DRTGTRYGGGTKY	RMACCCRYACAYH	Misc DeBoer et al.(2011) YNL216W_254	(Direct)	(Direct)
RAP1 M11214_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$RAP1_03	(Direct)	(Direct)
RAP1 M11215_2.00	Saccharomyces cerevisiae	RRTGTMTGGGTKYD	HRMACCCAKACAYY	Transfac Matys et al.(2006) F$RAP1_C	(Direct)	(Direct)
RAP1 M11216_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$RAP1_Q6	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M00378_2.00	Rap1	301	424	LVQIEQPQKDTSNNNNSNVNDEDNDLLTQDNNPQTADEGNASFQAQRSMISRGALPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKF
M00378_2.00	Rap1	448	579	KFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPMKNLTN
M01564_2.00	Rap1	301	424	LVQIEQPQKDTSNNNNSNVNDEDNDLLTQDNNPQTADEGNASFQAQRSMISRGALPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKF
M01564_2.00	Rap1	448	579	KFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPMKNLTN

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
YNL216W	Rap1	301	424	LVQIEQPQKDTSNNNNSNVNDEDNDLLTQDNNPQTADEGNASFQAQRSMISRGALPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKF
YNL216W	Rap1	448	579	KFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPMKNLTN

Links
Other Rap1 family TFs
Other *Saccharomyces cerevisiae* TFs

4 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
L889_g13201	Steinernema feltiae	L889_g13201	N
L889_g3978	Steinernema feltiae	L889_g3978	N
L898_g6438	Steinernema monticolum	L898_g6438	N