Cob_11986 (Colletotrichum orbiculare)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 Cob_11986 T318077_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.671 0.500
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.671 0.500
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.671 0.500
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.671 0.500
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.671 0.500
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.656 0.462
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENH78828 RFX 168 245

Links

Other RFX family TFs
Other Colletotrichum orbiculare TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_071560 Acremonium chrysogenum ACRE_071560 N
AGOS_AGL206C Ashbya gossypii AGOS_AGL206C N
CADAFLAG00000127 Aspergillus flavus CADAFLAG00000127 N
AFUA_7G04170 Aspergillus fumigatus CADAFUAG00009404 N
CADANGAG00010600 Aspergillus niger CADANGAG00010600 N
ATEG_04297 Aspergillus terreus CADATEAG00009296 N
PVAR5_2678 Byssochlamys spectabilis PVAR5_2678 N
A1O1_01510 Capronia coronata A1O1_01510 N
Z519_00213 Cladophialophora bantiana Z519_00213 N
PV07_08856 Cladophialophora immunda PV07_08856 I
A1O5_00212 Cladophialophora psammophila A1O5_00212 N
CFIO01_06855 Colletotrichum fioriniae CFIO01_06855 N
HMPREF1120_05946 Exophiala dermatitidis HMPREF1120_05946 N
PV10_00765 Exophiala mesophila PV10_00765 N
PV10_06879 Exophiala mesophila PV10_06879 N
PV11_00229 Exophiala sideris PV11_00229 N
PV11_02090 Exophiala sideris PV11_02090 N
PV05_04579 Exophiala xenobiotica PV05_04579 N
Z517_09459 Fonsecaea pedrosoi Z517_09459 N
JL09_g5708 Pichia kudriavzevii JL09_g5708 N
JL09_g5821 Pichia kudriavzevii JL09_g5821 N
V565_080510 Rhizoctonia solani V565_080510 N
AACERI_AaceriAGL206C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGL206C N