RFX5 (Equus caballus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSECAG00000024774 T318219_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.792 1.000
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.792 1.000
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.792 1.000
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.792 1.000
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.792 1.000
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.792 1.000
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.792 1.000
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.792 1.000
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.792 1.000
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.792 1.000
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.792 1.000
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.792 1.000
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.792 1.000
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.792 1.000
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.792 1.000
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.710 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.710 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.710 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000022315 RFX 89 168

Links

Other RFX family TFs
Other Equus caballus TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI005133 Acyrthosiphon pisum ACYPI005133 I
REL1B Aedes aegypti AAEL006930 I
AARA011865 Anopheles arabiensis AARA011865 I
AATE006484 Anopheles atroparvus AATE006484 I
ACHR009253 Anopheles christyi ACHR009253 I
ACOM032427 Anopheles coluzzii ACOM032427 I
ACUA016711 Anopheles culicifacies ACUA016711 I
ADAC001392 Anopheles darlingi ADAC001392 I
ADIR006013 Anopheles dirus ADIR006013 I
AEPI001360 Anopheles epiroticus AEPI001360 I
AFAF001010 Anopheles farauti AFAF001010 I
AFUN005302 Anopheles funestus AFUN005302 I
REL1 Anopheles gambiae AGAP009515 I
AMAM007568 Anopheles maculatus AMAM007568 I
AMEC000206 Anopheles melas AMEC000206 I
AMEM007632 Anopheles merus AMEM007632 I
AMIN001887 Anopheles minimus AMIN001887 I
AQUA005813 Anopheles quadriannulatus AQUA005813 I
ASTEI03826 Anopheles stephensi ASTEI03826 I
GB44031 Apis mellifera GB44031 I
ACEP24572 Atta cephalotes ACEP24572 I
Cflo_08314--NP_001011577.1_APIME Camponotus floridanus Cflo_08314--NP_001011577.1_APIME I
CLEC006384 Cimex lectularius CLEC006384 I
CpipJ_CPIJ015741 Culex pipiens CpipJ_CPIJ015741 I
CpipJ_CPIJ019376 Culex pipiens CpipJ_CPIJ019376 I
CpipJ_CPIJ002469 Culex pipiens CpipJ_CPIJ002469 I
CPIJ019376 Culex quinquefasciatus CPIJ019376 I
CPIJ002469 Culex quinquefasciatus CPIJ002469 I
CPIJ015741 Culex quinquefasciatus CPIJ015741 I
KGM_12899 Danaus plexippus KGM_12899 I
DAPPUDRAFT_52849 Daphnia pulex DAPPUDRAFT_52849 I
GF15103 Drosophila ananassae FBgn0092128 I
GG21746 Drosophila erecta FBgn0113924 I
GH10077 Drosophila grimshawi FBgn0117558 I
dl Drosophila melanogaster FBgn0260632 D
GI16541 Drosophila mojavensis FBgn0139289 I
GL18753 Drosophila persimilis FBgn0156354 I
GA19765 Drosophila pseudoobscura FBgn0079761 I
GM17128 Drosophila sechellia FBgn0172039 I
dl Drosophila simulans FBgn0067500 I
GJ16232 Drosophila virilis FBgn0203417 I
GK10525 Drosophila willistoni FBgn0212540 I
dl Drosophila yakuba FBgn0067431 I
Hsal_01917--NP_001011577.1_APIME Harpegnathos saltator Hsal_01917--NP_001011577.1_APIME I
LDEC008474 Leptinotarsa decemlineata LDEC008474 I
LCUP010246 Lucilia cuprina LCUP010246 I
MDOA008285 Musca domestica MDOA008285 I
PHUM534140 Pediculus humanus PHUM534140 I
PPAI001149 Phlebotomus papatasi PPAI001149 I
RPRC001614 Rhodnius prolixus RPRC001614 I
SINV14836 Solenopsis invicta SINV14836 I
TC007697 Tribolium castaneum TC007697 I
L798_11048 Zootermopsis nevadensis L798_11048 I