RFX5 (Felis catus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSFCAG00000005568 T318239_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.792 1.000
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.792 1.000
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.792 1.000
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.792 1.000
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.792 1.000
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.792 1.000
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.792 1.000
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.792 1.000
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.792 1.000
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.792 1.000
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.792 1.000
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.792 1.000
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.792 1.000
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.792 1.000
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.792 1.000
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.710 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.710 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.710 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFCAP00000005167 RFX 89 168

Links

Other RFX family TFs
Other Felis catus TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI47146 Acyrthosiphon pisum ACYPI47146 N
AAEL003097 Aedes aegypti AAEL003097 N
ENSAMEG00000006258 Ailuropoda melanoleuca ENSAMEG00000006258 N
Alligator_sinensis_CCG015084.1 Alligator sinensis Alligator_sinensis_CCG015084.1 N
AALB004109 Anopheles albimanus AALB004109 N
AARA007796 Anopheles arabiensis AARA007796 N
AATE013496 Anopheles atroparvus AATE013496 N
ACHR000042 Anopheles christyi ACHR000042 N
ACOM025306 Anopheles coluzzii ACOM025306 N
ADAC004139 Anopheles darlingi ADAC004139 N
AGAP007133 Anopheles gambiae AGAP007133 N
AMEC009276 Anopheles melas AMEC009276 N
AMEM004763 Anopheles merus AMEM004763 N
AMIN011274 Anopheles minimus AMIN011274 N
AQUA002064 Anopheles quadriannulatus AQUA002064 N
Afo_R003276 Aptenodytes forsteri Afo_R003276 N
ENSAMXG00000003636 Astyanax mexicanus ENSAMXG00000003636 N
ENSAMXG00000013350 Astyanax mexicanus ENSAMXG00000013350 N
ENSAMXG00000020082 Astyanax mexicanus ENSAMXG00000020082 N
ACEP21389 Atta cephalotes ACEP21389 N
ENSBTAP00000011330-D1 Bos grunniens ENSBTAP00000011330-D1 N
ENSP00000306522-D1 Bos grunniens ENSP00000306522-D1 N
CAMTA2 Bos taurus ENSBTAG00000008591 N
e_gw.96.31.1 Branchiostoma floridae e_gw.96.31.1 N
fgenesh2_pg.scaffold_96000095 Branchiostoma floridae fgenesh2_pg.scaffold_96000095 N
CAMTA2 Callithrix jacchus ENSCJAG00000011609 N
Aan_R005984 Calypte anna Aan_R005984 N
CAMTA2 Canis familiaris ENSCAFG00000015674 N
CAMTA1 Canis familiaris ENSCAFG00000019650 N
CapteG124203 Capitella teleta CapteG124203 N
CAMTA2 Cavia porcellus ENSCPOG00000007319 N
CAMTA1 Cavia porcellus ENSCPOG00000014759 N
ENSCSAG00000012903 Chlorocebus sabaeus ENSCSAG00000012903 N
CGI_10022084 Crassostrea gigas CGI_10022084 N
camta1b Danio rerio ENSDARG00000007824 N
camta1a Danio rerio ENSDARG00000077428 N
camta2 Danio rerio ENSDARG00000092799 N
DAPPUDRAFT_312030 Daphnia pulex DAPPUDRAFT_312030 N
CAMTA2 Dasypus novemcinctus ENSDNOG00000036357 N
Camta1 Dipodomys ordii ENSDORG00000003017 N
Camta2 Dipodomys ordii ENSDORG00000011763 N
Camta Drosophila melanogaster FBgn0259234 N
GA30460 Drosophila pseudoobscura FBgn0264597 N
GD10658 Drosophila simulans FBgn0182425 N
CAMTA1 Echinops telfairi ENSETEG00000006373 N
CAMTA2 Equus caballus ENSECAG00000019370 N
CAMTA1 Equus caballus ENSECAG00000020792 N
CAMTA2 Felis catus ENSFCAG00000008698 N
ENSFCAG00000022960 Felis catus ENSFCAG00000022960 N
ENSFALG00000009834 Ficedula albicollis ENSFALG00000009834 N
ENSGMOG00000017650 Gadus morhua ENSGMOG00000017650 N
ENSGMOG00000019408 Gadus morhua ENSGMOG00000019408 N
ENSGALG00000000610 Gallus gallus ENSGALG00000000610 N
ENSGACG00000001106 Gasterosteus aculeatus ENSGACG00000001106 N
camta1b Gasterosteus aculeatus ENSGACG00000007914 N
Gfo_R002636 Geospiza fortis Gfo_R002636 N
CAMTA1 Gorilla gorilla ENSGGOG00000003577 N
CAMTA2 Gorilla gorilla ENSGGOG00000009188 N
Hsal_08954--XP_001120489.1_APIME Harpegnathos saltator Hsal_08954--XP_001120489.1_APIME N
CAMTA2 Homo sapiens ENSG00000108509 N
CAMTA1 Homo sapiens ENSG00000171735 N
ENSSTOG00000003897 Ictidomys tridecemlineatus ENSSTOG00000003897 N
ENSSTOG00000011183 Ictidomys tridecemlineatus ENSSTOG00000011183 N
ISCW018640 Ixodes scapularis ISCW018640 N
ENSLACG00000014089 Latimeria chalumnae ENSLACG00000014089 N
ENSLACG00000014574 Latimeria chalumnae ENSLACG00000014574 N
ENSLOCG00000013712 Lepisosteus oculatus ENSLOCG00000013712 N
CAMTA2 Loxodonta africana ENSLAFG00000012042 N
LCUP001199 Lucilia cuprina LCUP001199 N
ENSP00000321813 Macaca fascicularis ENSP00000321813 N
CAMTA2 Macaca mulatta ENSMMUG00000009176 N
ENSMEUG00000007952 Macropus eugenii ENSMEUG00000007952 N
CAMTA2 Microcebus murinus ENSMICG00000012537 N
CAMTA2 Monodelphis domestica ENSMODG00000005219 N
ENSMODG00000005842 Monodelphis domestica ENSMODG00000005842 N
MDOA011429 Musca domestica MDOA011429 N
ENSMPUG00000006733 Mustela putorius furo ENSMPUG00000006733 N
ENSMPUG00000011010 Mustela putorius furo ENSMPUG00000011010 N
Camta1 Mus musculus ENSMUSG00000014592 N
Camta2 Mus musculus ENSMUSG00000040712 N
Myotis_brandtii_CAMTA2_10007480 Myotis brandtii Myotis_brandtii_CAMTA2_10007480 N
CAMTA2 Myotis lucifugus ENSMLUG00000014019 N
ENSNLEG00000008706 Nomascus leucogenys ENSNLEG00000008706 N
ENSNLEG00000017452 Nomascus leucogenys ENSNLEG00000017452 N
CAMTA1 Ochotona princeps ENSOPRG00000015968 N
Ogr01933 Ophisaurus gracilis Ogr01933 N
ENSONIG00000004505 Oreochromis niloticus ENSONIG00000004505 N
ENSONIG00000019368 Oreochromis niloticus ENSONIG00000019368 N
ENSOANG00000030450 Ornithorhynchus anatinus ENSOANG00000030450 N
CAMTA2 Oryctolagus cuniculus ENSOCUG00000001109 N
camta1b Oryzias latipes ENSORLG00000016337 N
CAMTA1 Otolemur garnettii ENSOGAG00000009792 N
CAMTA2 Otolemur garnettii ENSOGAG00000014734 N
ENSOARG00000004897 Ovis aries ENSOARG00000004897 N
CAMTA1 Pan troglodytes ENSPTRG00000000096 N
CAMTA2 Pan troglodytes ENSPTRG00000023129 N
ENSPANG00000024316 Papio anubis ENSPANG00000024316 N
PHUM466620 Pediculus humanus PHUM466620 N
ENSPSIG00000004616 Pelodiscus sinensis ENSPSIG00000004616 N
PPAI004941 Phlebotomus papatasi PPAI004941 N
ENSPFOG00000000859 Poecilia formosa ENSPFOG00000000859 N
ENSPFOG00000004225 Poecilia formosa ENSPFOG00000004225 N
ENSPFOG00000016244 Poecilia formosa ENSPFOG00000016244 N
Pvit_07906 Pogona vitticeps Pvit_07906 N
ENSPPYG00000001932 Pongo abelii ENSPPYG00000001932 N
ENSPPYG00000007853 Pongo abelii ENSPPYG00000007853 N
CAMTA2 Pteropus vampyrus ENSPVAG00000003768 N
CAMTA1 Pteropus vampyrus ENSPVAG00000005390 N
Camta2 Rattus norvegicus ENSRNOG00000004283 N
Camta1 Rattus norvegicus ENSRNOG00000018602 N
RPRC011455 Rhodnius prolixus RPRC011455 N
Sakowv30004245m.g Saccoglossus kowalevskii Sakowv30004245m.g N
ENSSHAG00000006160 Sarcophilus harrisii ENSSHAG00000006160 N
CAMTA2 Sorex araneus ENSSARG00000004137 N
SMAR001697 Strigamia maritima SMAR001697 N
CAMTA2 Sus scrofa ENSSSCG00000017902 N
CAMTA1 Taeniopygia guttata ENSTGUG00000002566 N
ENSTRUG00000000888 Takifugu rubripes ENSTRUG00000000888 N
camta1b Takifugu rubripes ENSTRUG00000010941 N
camta1a Takifugu rubripes ENSTRUG00000013622 N
ENSTSYG00000007714 Tarsius syrichta ENSTSYG00000007714 N
ENSTNIG00000001909 Tetraodon nigroviridis ENSTNIG00000001909 N
ENSTNIG00000003621 Tetraodon nigroviridis ENSTNIG00000003621 N
ENSTNIG00000012546 Tetraodon nigroviridis ENSTNIG00000012546 N
TC012001 Tribolium castaneum TC012001 N
CAMTA1 Tupaia belangeri ENSTBEG00000001406 N
CAMTA2 Tupaia belangeri ENSTBEG00000003130 N
CAMTA2 Tursiops truncatus ENSTTRG00000001303 N
CAMTA1 Tursiops truncatus ENSTTRG00000010366 N
camta2 Xenopus tropicalis XB-GENE-1033052 N
XP_002933905 Xenopus tropicalis XP_002933905 N
ENSXMAG00000001955 Xiphophorus maculatus ENSXMAG00000001955 N
ENSXMAG00000018742 Xiphophorus maculatus ENSXMAG00000018742 N