Afo_R011605 (Aptenodytes forsteri)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Afo_R011605 T318944_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.788 0.974
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.788 0.974
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.788 0.974
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.788 0.974
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.705 0.590
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.705 0.590
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.705 0.590
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.705 0.590
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.705 0.590
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.705 0.590
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.705 0.590
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.705 0.590
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.705 0.590
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.705 0.590
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.705 0.590
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.705 0.590
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.705 0.590
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.705 0.590
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.705 0.590
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R011605 RFX 8 85

Links

Other RFX family TFs
Other Aptenodytes forsteri TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL001428 Aedes aegypti AAEL001428 I
AALB005115 Anopheles albimanus AALB005115 I
AARA008036 Anopheles arabiensis AARA008036 I
AATE001925 Anopheles atroparvus AATE001925 I
ACHR004688 Anopheles christyi ACHR004688 I
ACOM025686 Anopheles coluzzii ACOM025686 I
ACUA018337 Anopheles culicifacies ACUA018337 I
ADAC002255 Anopheles darlingi ADAC002255 I
ADIR007247 Anopheles dirus ADIR007247 I
AEPI009203 Anopheles epiroticus AEPI009203 I
AFAF013289 Anopheles farauti AFAF013289 I
AFUN009268 Anopheles funestus AFUN009268 I
AGAP007450 Anopheles gambiae AGAP007450 I
AMEC000625 Anopheles melas AMEC000625 I
AMEM007511 Anopheles merus AMEM007511 I
AMIN010454 Anopheles minimus AMIN010454 I
AQUA004460 Anopheles quadriannulatus AQUA004460 I
ASIS014948 Anopheles sinensis ASIS014948 I
ASTEI01378 Anopheles stephensi ASTEI01378 I
Afo_R005157 Aptenodytes forsteri Afo_R005157 I
ENSAMXG00000011148 Astyanax mexicanus ENSAMXG00000011148 N
ENSAMXG00000011237 Astyanax mexicanus ENSAMXG00000011237 I
HEY1 Bos taurus ENSBTAG00000015717 I
Brh_R005579 Buceros rhinoceros Brh_R005579 I
HEY1 Canis familiaris ENSCAFG00000008391 I
CapteG228069 Capitella teleta CapteG228069 I
HEY1 Cavia porcellus ENSCPOG00000008527 I
ENSCSAG00000013410 Chlorocebus sabaeus ENSCSAG00000013410 I
CpipJ_CPIJ017595 Culex pipiens CpipJ_CPIJ017595 I
CPIJ017595 Culex quinquefasciatus CPIJ017595 I
heyl Danio rerio ENSDARG00000055798 I
hey1 Danio rerio ENSDARG00000070538 I
HEY1 Dasypus novemcinctus ENSDNOG00000031981 I
YQE_09192 Dendroctonus ponderosae YQE_09192 I
GF11221 Drosophila ananassae FBgn0088261 I
GG10686 Drosophila erecta FBgn0102992 I
GH19996 Drosophila grimshawi FBgn0127460 I
Hey Drosophila melanogaster FBgn0027788 D
GI19174 Drosophila mojavensis FBgn0141913 I
GL10603 Drosophila persimilis FBgn0148213 I
GA10830 Drosophila pseudoobscura FBgn0070886 I
GM20733 Drosophila sechellia FBgn0175614 I
GD10199 Drosophila simulans FBgn0181974 I
GD10200 Drosophila simulans FBgn0181975 I
GJ20236 Drosophila virilis FBgn0207376 I
GK21562 Drosophila willistoni FBgn0223554 I
GE23399 Drosophila yakuba FBgn0240591 I
HEY1 Equus caballus ENSECAG00000017010 I
HEYL Felis catus ENSFCAG00000010963 I
HEY1 Felis catus ENSFCAG00000025542 I
ENSFALG00000008605 Ficedula albicollis ENSFALG00000008605 I
ENSGMOG00000011084 Gadus morhua ENSGMOG00000011084 I
ENSGMOG00000013488 Gadus morhua ENSGMOG00000013488 I
ENSGMOG00000017811 Gadus morhua ENSGMOG00000017811 I
hey1 Gasterosteus aculeatus ENSGACG00000003436 I
heyl Gasterosteus aculeatus ENSGACG00000007492 I
HEY1 Gasterosteus aculeatus ENSGACG00000008712 I
Gfo_R007552 Geospiza fortis Gfo_R007552 I
HEY1 Gorilla gorilla ENSGGOG00000009960 I
HEY1 Homo sapiens ENSG00000164683 D
ENSSTOG00000023191 Ictidomys tridecemlineatus ENSSTOG00000023191 I
ENSLACG00000015540 Latimeria chalumnae ENSLACG00000015540 I
ENSLOCG00000001853 Lepisosteus oculatus ENSLOCG00000001853 I
LDEC001043 Leptinotarsa decemlineata LDEC001043 I
LotgiG171867 Lottia gigantea LotgiG171867 I
HEY1 Loxodonta africana ENSLAFG00000011488 I
LCUP005888 Lucilia cuprina LCUP005888 I
LLOJ002069 Lutzomyia longipalpis LLOJ002069 I
HEY1 Monodelphis domestica ENSMODG00000006648 I
MDOA011625 Musca domestica MDOA011625 I
ENSMPUG00000001859 Mustela putorius furo ENSMPUG00000001859 I
Hey1 Mus musculus ENSMUSG00000040289 I
Myotis_brandtii_HEY1_10021379 Myotis brandtii Myotis_brandtii_HEY1_10021379 I
ENSNLEG00000002239 Nomascus leucogenys ENSNLEG00000002239 I
Ogr14041 Ophisaurus gracilis Ogr14041 I
ENSONIG00000002623 Oreochromis niloticus ENSONIG00000002623 I
ENSONIG00000003087 Oreochromis niloticus ENSONIG00000003087 I
ENSONIG00000004726 Oreochromis niloticus ENSONIG00000004726 I
HEY1 Oryzias latipes ENSORLG00000008268 I
hey1 Oryzias latipes ENSORLG00000012953 I
heyl Oryzias latipes ENSORLG00000013651 I
HEY1 Otolemur garnettii ENSOGAG00000007210 I
ENSOARG00000008063 Ovis aries ENSOARG00000008063 I
ENSPANG00000018687 Papio anubis ENSPANG00000018687 I
ENSPSIG00000003791 Pelodiscus sinensis ENSPSIG00000003791 I
ENSPFOG00000001913 Poecilia formosa ENSPFOG00000001913 I
ENSPFOG00000015536 Poecilia formosa ENSPFOG00000015536 I
Pvit_00065 Pogona vitticeps Pvit_00065 I
ENSPPYG00000018693 Pongo abelii ENSPPYG00000018693 I
Hey1 Rattus norvegicus ENSRNOG00000011593 I
ENSSHAG00000017958 Sarcophilus harrisii ENSSHAG00000017958 I
HEY1 Sus scrofa ENSSSCG00000006159 I
heyl Takifugu rubripes ENSTRUG00000003399 I
HEY1 Takifugu rubripes ENSTRUG00000013573 I
hey1 Takifugu rubripes ENSTRUG00000014561 I
heyl Tetraodon nigroviridis ENSTNIG00000009228 I
hey1 Tetraodon nigroviridis ENSTNIG00000017785 I
HEY1 Tetraodon nigroviridis ENSTNIG00000018401 I
TC001593 Tribolium castaneum TC001593 I
hey1.S Xenopus laevis XB-GENE-865637 I
hey1 Xenopus tropicalis XB-GENE-486694 I
ENSXMAG00000003593 Xiphophorus maculatus ENSXMAG00000003593 I
ENSXMAG00000006950 Xiphophorus maculatus ENSXMAG00000006950 I
ENSXMAG00000014241 Xiphophorus maculatus ENSXMAG00000014241 I