ENSP00000389130-D1 (Bos grunniens)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 ENSP00000389130-D1 T318984_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.792 1.000
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.792 1.000
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.792 1.000
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.792 1.000
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.792 1.000
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.792 1.000
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.792 1.000
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.792 1.000
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.792 1.000
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.792 1.000
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.792 1.000
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.792 1.000
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.792 1.000
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.792 1.000
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.792 1.000
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.710 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.710 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.710 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000389130-D1 RFX 89 168

Links

Other RFX family TFs
Other Bos grunniens TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_013750 Acremonium chrysogenum ACRE_013750 I
AGABI2DRAFT_117758 Agaricus bisporus AGABI2DRAFT_117758 N
M378DRAFT_197822 Amanita muscaria M378DRAFT_197822 I
ARB_01321 Arthroderma benhamiae ARB_01321 I
MCYG_02230 Arthroderma otae MCYG_02230 I
MCYG_05833 Arthroderma otae MCYG_05833 I
e_gw1.00710.51.1 Aspergillus carbonarius e_gw1.00710.51.1 I
fgenesh1_pm.00168_#_452 Aspergillus carbonarius fgenesh1_pm.00168_#_452 I
ACLA_002350 Aspergillus clavatus CADACLAG00000323 I
ACLA_070410 Aspergillus clavatus CADACLAG00006808 N
AFUA_5G02800 Aspergillus fumigatus CADAFUAG00002739 I
AFUA_5G01460 Aspergillus fumigatus CADAFUAG00002865 N
AFUA_2G11460 Aspergillus fumigatus CADAFUAG00004521 I
AFUA_5G12930 Aspergillus fumigatus CADAFUAG00006653 I
ANIA_05870 Aspergillus nidulans CADANIAG00007168 I
ANIA_06846 Aspergillus nidulans CADANIAG00007644 D
EURHEDRAFT_513477 Aspergillus ruber EURHEDRAFT_513477 N
EURHEDRAFT_528519 Aspergillus ruber EURHEDRAFT_528519 I
M437DRAFT_14692 Aureobasidium melanogenum M437DRAFT_14692 I
M438DRAFT_323991 Aureobasidium pullulans M438DRAFT_323991 I
M438DRAFT_344531 Aureobasidium pullulans M438DRAFT_344531 I
AUEXF2481DRAFT_24415 Aureobasidium subglaciale AUEXF2481DRAFT_24415 I
AUEXF2481DRAFT_456199 Aureobasidium subglaciale AUEXF2481DRAFT_456199 I
BBA_01514 Beauveria bassiana BBA_01514 I
BBA_07071 Beauveria bassiana BBA_07071 I
COCC4DRAFT_19355 Bipolaris maydis COCC4DRAFT_19355 I
COCMIDRAFT_24418 Bipolaris oryzae COCMIDRAFT_24418 I
COCSADRAFT_306311 Bipolaris sorokiniana COCSADRAFT_306311 I
COCVIDRAFT_12188 Bipolaris victoriae COCVIDRAFT_12188 I
COCCADRAFT_32122 Bipolaris zeicola COCCADRAFT_32122 I
BDDG_02031 Blastomyces dermatitidis BDDG_02031 I
BOTBODRAFT_202080 Botryobasidium botryosum BOTBODRAFT_202080 N
Bcin04g01240 Botrytis cinerea Bcin04g01240 I
PVAR5_2500 Byssochlamys spectabilis PVAR5_2500 I
PVAR5_3215 Byssochlamys spectabilis PVAR5_3215 I
PVAR5_5942 Byssochlamys spectabilis PVAR5_5942 I
CaO19.1168 Candida albicans CaO19.1168 I
CaO19.8761 Candida albicans CaO19.8761 I
CD36_10810 Candida dubliniensis CD36_10810 I
G210_5732 Candida maltosa G210_5732 I
CTRG_03493 Candida tropicalis CTRG_03493 I
A1O3_07754 Capronia epimyces A1O3_07754 I
PV04_00855 Capronia semiimmersa PV04_00855 I
CERSUDRAFT_114532 Ceriporiopsis subvermispora CERSUDRAFT_114532 I
Z519_04194 Cladophialophora bantiana Z519_04194 I
G647_01190 Cladophialophora carrionii G647_01190 I
A1O7_01132 Cladophialophora yegresii A1O7_01132 I
CIMG_04661 Coccidioides immitis CIMG_04661 I
CIMG_08192 Coccidioides immitis CIMG_08192 I
CPC735_022090 Coccidioides posadasii CPC735_022090 I
estExt_fgenesh1_pg.C_40169 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_40169 I
CFIO01_07975 Colletotrichum fioriniae CFIO01_07975 I
CFIO01_12268 Colletotrichum fioriniae CFIO01_12268 I
CGGC5_2102 Colletotrichum gloeosporioides CGGC5_2102 I
GLRG_00281 Colletotrichum graminicola GLRG_00281 I
GLRG_02776 Colletotrichum graminicola GLRG_02776 I
GLRG_05504 Colletotrichum graminicola GLRG_05504 I
CH063_01368 Colletotrichum higginsianum CH063_01368 N
CH063_11393 Colletotrichum higginsianum CH063_11393 I
CSUB01_08743 Colletotrichum sublineola CSUB01_08743 I
CSUB01_12509 Colletotrichum sublineola CSUB01_12509 I
W97_02535 Coniosporium apollinis W97_02535 I
CCM_04341 Cordyceps militaris CCM_04341 I
e_gw1.3.1267.1 Cryphonectria parasitica e_gw1.3.1267.1 I
HMPREF1541_00116 Cyphellophora europaea HMPREF1541_00116 I
DEHA2C03058g Debaryomyces hansenii DEHA2C03058g I
A1O9_01837 Exophiala aquamarina A1O9_01837 I
HMPREF1120_08148 Exophiala dermatitidis HMPREF1120_08148 I
PV10_06359 Exophiala mesophila PV10_06359 I
PV06_05186 Exophiala oligosperma PV06_05186 N
PV06_07392 Exophiala oligosperma PV06_07392 I
FIBRA_03539 Fibroporia radiculosa FIBRA_03539 I
FOMPIDRAFT_1024907 Fomitopsis pinicola FOMPIDRAFT_1024907 I
Z517_04525 Fonsecaea pedrosoi Z517_04525 I
FFUJ_04988 Fusarium fujikuroi FFUJ_04988 I
FFUJ_09638 Fusarium fujikuroi FFUJ_09638 I
FGRRES_06160 Fusarium graminearum FGRRES_06160 I
FGRRES_16137 Fusarium graminearum FGRRES_16137 I
FOXG_08550 Fusarium oxysporum FOXG_08550 I
FOXG_11440 Fusarium oxysporum FOXG_11440 I
FPSE_02512 Fusarium pseudograminearum FPSE_02512 I
FPSE_10395 Fusarium pseudograminearum FPSE_10395 I
NechaG103398 Fusarium solani NechaG103398 I
FVEG_10380 Fusarium verticillioides FVEG_10380 I
GGTG_05803 Gaeumannomyces graminis GGTG_05803 I
GALMADRAFT_249209 Galerina marginata GALMADRAFT_249209 I
GLOTRDRAFT_115334 Gloeophyllum trabeum GLOTRDRAFT_115334 N
M413DRAFT_441943 Hebeloma cylindrosporum M413DRAFT_441943 I
estExt_fgenesh2_pm.C_30405 Heterobasidion annosum estExt_fgenesh2_pm.C_30405 N
HETIRDRAFT_410078 Heterobasidion irregulare HETIRDRAFT_410078 N
KUCA_T00005789001 Kuraishia capsulata KUCA_T00005789001 I
LACBIDRAFT_313811 Laccaria bicolor LACBIDRAFT_313811 N
LEMA_P120870.1 Leptosphaeria maculans LEMA_P120870.1 I
MGG_05153 Magnaporthe oryzae MGG_05153 I
MGG_07131 Magnaporthe oryzae MGG_07131 I
MAPG_04101 Magnaporthe poae MAPG_04101 I
MBM_00253 Marssonina brunnea MBM_00253 I
MAC_00726 Metarhizium acridum MAC_00726 N
MAM_03911 Metarhizium album MAM_03911 N
MANI_020691 Metarhizium anisopliae MANI_020691 N
MBR_00349 Metarhizium brunneum MBR_00349 N
MGU_01192 Metarhizium guizhouense MGU_01192 N
MAJ_01716 Metarhizium majus MAJ_01716 N
X797_005336 Metarhizium robertsii X797_005336 N
X797_008651 Metarhizium robertsii X797_008651 I
X797_011064 Metarhizium robertsii X797_011064 I
MCYG_02230 Microsporum canis MCYG_02230 I
MCYG_05833 Microsporum canis MCYG_05833 I
MGYG_02927 Microsporum gypseum MGYG_02927 I
MGYG_06143 Microsporum gypseum MGYG_06143 I
Moror_6819 Moniliophthora roreri Moror_6819 I
estExt_fgenesh1_pm.C_sca_18_chr2_1_00326 Nectria haematococca estExt_fgenesh1_pm.C_sca_18_chr2_1_00326 I
NFIA_040650 Neosartorya fischeri CADNFIAG00003354 I
NFIA_039290 Neosartorya fischeri CADNFIAG00003792 I
NFIA_074150 Neosartorya fischeri CADNFIAG00007185 I
NFIA_086700 Neosartorya fischeri CADNFIAG00008233 I
HPODL_02161 Ogataea parapolymorpha HPODL_02161 I
OCS_01600 Ophiocordyceps sinensis OCS_01600 I
F503_05786 Ophiostoma piceae uamh F503_05786 I
PABG_00737 Paracoccidioides brasiliensis PABG_00737 I
PAAG_03678 Paracoccidioides sp lutzii PAAG_03678 I
PAXRUDRAFT_132889 Paxillus rubicundulus PAXRUDRAFT_132889 I
PEX1_066340 Penicillium expansum PEX1_066340 I
PITC_033600 Penicillium italicum PITC_033600 I
PMAA_014320 Penicillium marneffei PMAA_014320 N
PMAA_041870 Penicillium marneffei PMAA_041870 I
PDE_08558 Penicillium oxalicum PDE_08558 I
PDE_09179 Penicillium oxalicum PDE_09179 I
U727_00434270371 Penicillium solitum U727_00434270371 I
PFICI_05184 Pestalotiopsis fici PFICI_05184 I
PILCRDRAFT_51 Piloderma croceum PILCRDRAFT_51 I
PIIN_01818 Piriformospora indica PIIN_01818 N
PIIN_04332 Piriformospora indica PIIN_04332 N
PISMIDRAFT_675317 Pisolithus microcarpus PISMIDRAFT_675317 I
M404DRAFT_130508 Pisolithus tinctorius M404DRAFT_130508 I
PLEOSDRAFT_158391 Pleurotus ostreatus PLEOSDRAFT_158391 I
PTT_16310 Pyrenophora teres PTT_16310 I
PTRG_07169 Pyrenophora triticirepentis PTRG_07169 I
V565_106980 Rhizoctonia solani V565_106980 N
SAPIO_CDS8046 Scedosporium apiospermum SAPIO_CDS8046 I
SCLCIDRAFT_1208573 Scleroderma citrinum SCLCIDRAFT_1208573 N
SERLA73DRAFT_159962 Serpula lacrymans SERLA73DRAFT_159962 I
SETTUDRAFT_166718 Setosphaeria turcica SETTUDRAFT_166718 N
SPAPADRAFT_61489 Spathaspora passalidarum SPAPADRAFT_61489 I
S40288_06232 Stachybotrys chartarum S40288_06232 I
S40285_00977 Stachybotrys chlorohalonata S40285_00977 I
SNOG_00909 Stagonospora nodorum SNOG_00909 I
PMAA_014320 Talaromyces marneffei PMAA_014320 N
PMAA_041870 Talaromyces marneffei PMAA_041870 I
TSTA_020390 Talaromyces stipitatus TSTA_020390 I
TSTA_038740 Talaromyces stipitatus TSTA_038740 I
TSTA_076120 Talaromyces stipitatus TSTA_076120 I
TSTA_122850 Talaromyces stipitatus TSTA_122850 I
BN946_scf184775.g19 Trametes cinnabarina BN946_scf184775.g19 N
fgeneshTM_pg.13_#_14 Tremella mesenterica fgeneshTM_pg.13_#_14 N
TRIATDRAFT_34316 Trichoderma atroviride TRIATDRAFT_34316 I
TRIREDRAFT_55274 Trichoderma reesei TRIREDRAFT_55274 I
TRIVIDRAFT_28488 Trichoderma virens TRIVIDRAFT_28488 N
TRIVIDRAFT_55531 Trichoderma virens TRIVIDRAFT_55531 I
TEQG_05320 Trichophyton equinum TEQG_05320 I
TEQG_06790 Trichophyton equinum TEQG_06790 I
H101_03862 Trichophyton interdigitale H101_03862 I
H101_07358 Trichophyton interdigitale H101_07358 I
H102_03415 Trichophyton rubrum H102_03415 I
H105_03436 Trichophyton soudanense H105_03436 I
TESG_06426 Trichophyton tonsurans TESG_06426 I
TESG_06981 Trichophyton tonsurans TESG_06981 I
TRV_07383 Trichophyton verrucosum TRV_07383 I
VDAG_08992 Verticillium dahliae VDAG_08992 I