Ogr03659 (Ophisaurus gracilis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Ogr03659 T319008_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.768 0.949
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.768 0.949
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.768 0.949
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.768 0.949
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.768 0.949
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.768 0.949
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.768 0.949
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.768 0.949
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.768 0.949
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.768 0.949
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.768 0.949
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.763 0.823
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.762 0.835
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.762 0.835
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.762 0.835
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.762 0.810
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.761 0.835
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.761 0.835
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.761 0.835
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.761 0.835
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.761 0.835
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.761 0.835
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.761 0.835
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.761 0.835
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.761 0.835
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.761 0.848
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.761 0.848
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.761 0.848
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.761 0.848
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.760 0.797
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.760 0.835
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.760 0.835
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.759 0.835
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.759 0.835
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.759 0.835
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.759 0.835
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.759 0.835
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.759 0.835
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.759 0.759
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.752 0.785
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.752 0.785
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.752 0.785
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.752 0.785
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.752 0.785
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.744 0.797
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.731 0.658
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.702 0.608
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.702 0.608
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.702 0.608
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.702 0.608
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.702 0.608
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.702 0.608
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.684 0.608
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.652 0.418
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.652 0.418
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.652 0.418
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.652 0.418
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.652 0.418
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr03659 RFX 134 212

Links

Other RFX family TFs
Other Ophisaurus gracilis TFs

719 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000019054 Ailuropoda melanoleuca ENSAMEG00000019054 I
Alligator_sinensis_CCG005176.1 Alligator sinensis Alligator_sinensis_CCG005176.1 I
ENSAPLG00000002204 Anas platyrhynchos ENSAPLG00000002204 I
NFIL3 Anolis carolinensis ENSACAG00000000915 I
Afo_R003629 Aptenodytes forsteri Afo_R003629 I
ENSAMXG00000024924 Astyanax mexicanus ENSAMXG00000024924 I
ENSAMXG00000025528 Astyanax mexicanus ENSAMXG00000025528 I
ENSBTAP00000023618-D1 Bos grunniens ENSBTAP00000023618-D1 I
NFIL3 Bos taurus ENSBTAG00000017763 I
Brh_R002139 Buceros rhinoceros Brh_R002139 I
NFIL3 Callithrix jacchus ENSCJAG00000005728 I
Aan_R012398 Calypte anna Aan_R012398 I
NFIL3 Canis familiaris ENSCAFG00000002169 I
Cmyd_10009373 Chelonia mydas Cmyd_10009373 I
ENSCSAG00000018511 Chlorocebus sabaeus ENSCSAG00000018511 I
NFIL3 Choloepus hoffmanni ENSCHOG00000006006 I
nfil3 Danio rerio ENSDARG00000042977 I
ENSDNOG00000045269 Dasypus novemcinctus ENSDNOG00000045269 I
NFIL3 Felis catus ENSFCAG00000013483 I
ENSFALG00000014613 Ficedula albicollis ENSFALG00000014613 I
ENSGMOG00000008894 Gadus morhua ENSGMOG00000008894 I
NFIL3 Gallus gallus ENSGALG00000015209 I
ENSGACG00000006400 Gasterosteus aculeatus ENSGACG00000006400 I
Gfo_R004089 Geospiza fortis Gfo_R004089 I
NFIL3 Gorilla gorilla ENSGGOG00000001317 I
NFIL3 Homo sapiens ENSG00000165030 D
ENSSTOG00000028188 Ictidomys tridecemlineatus ENSSTOG00000028188 I
ENSLOCG00000018299 Lepisosteus oculatus ENSLOCG00000018299 I
ENSLOCG00000008217 Lepisosteus oculatus ENSLOCG00000008217 I
ENSLAFG00000017043 Loxodonta africana ENSLAFG00000017043 I
ENSP00000297689 Macaca fascicularis ENSP00000297689 I
NFIL3 Macaca mulatta ENSMMUG00000023257 I
NFIL3 Meleagris gallopavo ENSMGAG00000016056 I
NFIL3 Monodelphis domestica ENSMODG00000025436 I
ENSMPUG00000019999 Mustela putorius furo ENSMPUG00000019999 I
Nfil3 Mus musculus ENSMUSG00000056749 D
Myotis_brandtii_NFIL3_10016869 Myotis brandtii Myotis_brandtii_NFIL3_10016869 I
NFIL3 Myotis lucifugus ENSMLUG00000010449 I
ENSNLEG00000018673 Nomascus leucogenys ENSNLEG00000018673 I
Ogr15166 Ophisaurus gracilis Ogr15166 I
ENSONIG00000018891 Oreochromis niloticus ENSONIG00000018891 I
ENSONIG00000021308 Oreochromis niloticus ENSONIG00000021308 I
NFIL3 Oryctolagus cuniculus ENSOCUG00000000145 I
ENSORLG00000016478 Oryzias latipes ENSORLG00000016478 I
NFIL3 Otolemur garnettii ENSOGAG00000011750 I
ENSOARG00000003352 Ovis aries ENSOARG00000003352 I
NFIL3 Pan troglodytes ENSPTRG00000021100 I
ENSPANG00000006675 Papio anubis ENSPANG00000006675 I
ENSPSIG00000011205 Pelodiscus sinensis ENSPSIG00000011205 I
ENSPFOG00000023063 Poecilia formosa ENSPFOG00000023063 I
Pvit_13069 Pogona vitticeps Pvit_13069 I
ENSPPYG00000019368 Pongo abelii ENSPPYG00000019368 I
NFIL3 Pteropus vampyrus ENSPVAG00000004801 I
Nfil3 Rattus norvegicus ENSRNOG00000011668 I
ENSSHAG00000008103 Sarcophilus harrisii ENSSHAG00000008103 I
NFIL3 Sus scrofa ENSSSCG00000009592 I
NFIL3 Taeniopygia guttata ENSTGUG00000000417 I
ENSTNIG00000008333 Tetraodon nigroviridis ENSTNIG00000008333 I
NFIL3 Tupaia belangeri ENSTBEG00000000787 I
NFIL3 Tursiops truncatus ENSTTRG00000014041 I
Tal_R002924 Tyto alba Tal_R002924 I
nfil3.L Xenopus laevis XB-GENE-865288 I
nfil3 Xenopus tropicalis XB-GENE-479624 I
ENSXMAG00000019943 Xiphophorus maculatus ENSXMAG00000019943 I