A_01977 (Schistosoma haematobium)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 A_01977 T319152_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.707 0.557
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.707 0.557
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.707 0.557
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.707 0.557
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.700 0.557
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.700 0.557
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.700 0.557
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.700 0.557
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.700 0.557
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.700 0.557
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.700 0.557
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.700 0.557
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.700 0.557
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.700 0.557
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.700 0.557
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.700 0.557
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.700 0.557
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.700 0.557
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.700 0.557
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
A_01977 RFX 112 190

Links

Other RFX family TFs
Other Schistosoma haematobium TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000011210 Ailuropoda melanoleuca ENSAMEG00000011210 I
ENSAMEG00000011282 Ailuropoda melanoleuca ENSAMEG00000011282 I
Alligator_sinensis_CCG005573.1 Alligator sinensis Alligator_sinensis_CCG005573.1 I
ENSAPLG00000014751 Anas platyrhynchos ENSAPLG00000014751 I
CXXC5 Anolis carolinensis ENSACAG00000002186 I
Afo_R004362 Aptenodytes forsteri Afo_R004362 I
ENSAMXG00000005579 Astyanax mexicanus ENSAMXG00000005579 I
ENSAMXG00000016016 Astyanax mexicanus ENSAMXG00000016016 I
ENSAMXG00000018855 Astyanax mexicanus ENSAMXG00000018855 I
ENSAMXG00000025596 Astyanax mexicanus ENSAMXG00000025596 I
ENSBTAP00000005204-D1 Bos grunniens ENSBTAP00000005204-D1 I
ENSP00000378248-D1 Bos grunniens ENSP00000378248-D1 I
ENSBTAG00000001751 Bos taurus ENSBTAG00000001751 I
CXXC5 Bos taurus ENSBTAG00000003986 I
Brh_R010009 Buceros rhinoceros Brh_R010009 I
ENSCJAG00000015701 Callithrix jacchus ENSCJAG00000015701 I
Aan_R008171 Calypte anna Aan_R008171 I
CXXC5 Canis familiaris ENSCAFG00000005714 I
ENSCAFG00000031237 Canis familiaris ENSCAFG00000031237 I
CXXC5 Cavia porcellus ENSCPOG00000001156 I
ENSCPOG00000021934 Cavia porcellus ENSCPOG00000021934 I
Cmyd_10008669 Chelonia mydas Cmyd_10008669 I
ENSCSAG00000004010 Chlorocebus sabaeus ENSCSAG00000004010 I
ENSCSAG00000013001 Chlorocebus sabaeus ENSCSAG00000013001 I
ENSCSAG00000015514 Chlorocebus sabaeus ENSCSAG00000015514 I
cxxc5b Danio rerio ENSDARG00000075735 I
cxxc4 Danio rerio ENSDARG00000077817 I
cxxc5a Danio rerio ENSDARG00000078865 I
CABZ01081359.1 Danio rerio ENSDARG00000104578 I
CXXC5 Dasypus novemcinctus ENSDNOG00000008161 I
TET3 Dasypus novemcinctus ENSDNOG00000047130 I
ENSDORG00000003728 Dipodomys ordii ENSDORG00000003728 I
ENSETEG00000009591 Echinops telfairi ENSETEG00000009591 I
CXXC5 Equus caballus ENSECAG00000016958 I
CXXC5 Erinaceus europaeus ENSEEUG00000008125 I
CXXC5 Felis catus ENSFCAG00000010527 I
ENSFALG00000009467 Ficedula albicollis ENSFALG00000009467 I
ENSGMOG00000019280 Gadus morhua ENSGMOG00000019280 I
ENSGMOG00000019812 Gadus morhua ENSGMOG00000019812 I
CXXC5 Gallus gallus ENSGALG00000000884 I
ENSGACG00000017555 Gasterosteus aculeatus ENSGACG00000017555 I
cxxc5a Gasterosteus aculeatus ENSGACG00000020657 I
Gfo_R011184 Geospiza fortis Gfo_R011184 I
CXXC5 Gorilla gorilla ENSGGOG00000014181 I
ENSGGOG00000028495 Gorilla gorilla ENSGGOG00000028495 I
CXXC4 Homo sapiens ENSG00000168772 I
CXXC5 Homo sapiens ENSG00000171604 D
ENSSTOG00000020058 Ictidomys tridecemlineatus ENSSTOG00000020058 I
ENSSTOG00000025994 Ictidomys tridecemlineatus ENSSTOG00000025994 I
ENSLACG00000003110 Latimeria chalumnae ENSLACG00000003110 I
ENSLACG00000011147 Latimeria chalumnae ENSLACG00000011147 I
ENSLOCG00000012594 Lepisosteus oculatus ENSLOCG00000012594 I
ENSLOCG00000012610 Lepisosteus oculatus ENSLOCG00000012610 I
CXXC5 Loxodonta africana ENSLAFG00000011784 I
ENSLAFG00000030012 Loxodonta africana ENSLAFG00000030012 I
ENSP00000302543 Macaca fascicularis ENSP00000302543 I
ENSP00000378248 Macaca fascicularis ENSP00000378248 I
CXXC5 Macaca mulatta ENSMMUG00000001941 I
CXXC4 Macaca mulatta ENSMMUG00000011660 I
ENSMEUG00000015364 Macropus eugenii ENSMEUG00000015364 I
CXXC5 Meleagris gallopavo ENSMGAG00000003042 I
CXXC5 Microcebus murinus ENSMICG00000002899 I
CXXC5 Monodelphis domestica ENSMODG00000011772 I
ENSMODG00000020651 Monodelphis domestica ENSMODG00000020651 I
ENSMPUG00000009101 Mustela putorius furo ENSMPUG00000009101 I
ENSMPUG00000009175 Mustela putorius furo ENSMPUG00000009175 I
Tet3 Mus musculus ENSMUSG00000034832 I
Cxxc4 Mus musculus ENSMUSG00000044365 I
Cxxc5 Mus musculus ENSMUSG00000046668 I
Myotis_brandtii_Cxxc4_10030627 Myotis brandtii Myotis_brandtii_Cxxc4_10030627 I
Myotis_brandtii_CXXC5_10027816 Myotis brandtii Myotis_brandtii_CXXC5_10027816 I
CXXC5 Myotis lucifugus ENSMLUG00000003056 I
ENSMLUG00000003691 Myotis lucifugus ENSMLUG00000003691 I
ENSNLEG00000009189 Nomascus leucogenys ENSNLEG00000009189 I
ENSNLEG00000013306 Nomascus leucogenys ENSNLEG00000013306 I
CXXC5 Ochotona princeps ENSOPRG00000003163 I
Ogr13317 Ophisaurus gracilis Ogr13317 I
ENSONIG00000005000 Oreochromis niloticus ENSONIG00000005000 I
ENSONIG00000017539 Oreochromis niloticus ENSONIG00000017539 I
ENSONIG00000020654 Oreochromis niloticus ENSONIG00000020654 I
ENSOANG00000008235 Ornithorhynchus anatinus ENSOANG00000008235 I
ENSOANG00000009530 Ornithorhynchus anatinus ENSOANG00000009530 I
ENSOCUG00000015536 Oryctolagus cuniculus ENSOCUG00000015536 I
cxxc5a Oryzias latipes ENSORLG00000006108 I
ENSORLG00000006474 Oryzias latipes ENSORLG00000006474 I
CXXC5 Otolemur garnettii ENSOGAG00000024233 I
ENSOGAG00000026362 Otolemur garnettii ENSOGAG00000026362 I
ENSOARG00000010827 Ovis aries ENSOARG00000010827 I
ENSPTRG00000016332 Pan troglodytes ENSPTRG00000016332 I
CXXC5 Pan troglodytes ENSPTRG00000017304 I
ENSPANG00000011930 Papio anubis ENSPANG00000011930 I
ENSPSIG00000010569 Pelodiscus sinensis ENSPSIG00000010569 I
ENSPSIG00000013782 Pelodiscus sinensis ENSPSIG00000013782 I
ENSPFOG00000003666 Poecilia formosa ENSPFOG00000003666 I
ENSPFOG00000012064 Poecilia formosa ENSPFOG00000012064 I
ENSPFOG00000012083 Poecilia formosa ENSPFOG00000012083 I
ENSPFOG00000018974 Poecilia formosa ENSPFOG00000018974 I
ENSPFOG00000019888 Poecilia formosa ENSPFOG00000019888 I
Pvit_06919 Pogona vitticeps Pvit_06919 I
Pvit_12827 Pogona vitticeps Pvit_12827 I
ENSPPYG00000014973 Pongo abelii ENSPPYG00000014973 I
ENSPPYG00000015845 Pongo abelii ENSPPYG00000015845 I
CXXC5 Procavia capensis ENSPCAG00000001216 I
ENSPCAG00000002905 Procavia capensis ENSPCAG00000002905 I
CXXC4 Pteropus vampyrus ENSPVAG00000001501 I
Cxxc5 Rattus norvegicus ENSRNOG00000003734 I
Tet3 Rattus norvegicus ENSRNOG00000011387 I
Cxxc5 Rattus norvegicus ENSRNOG00000032878 I
Cxxc4 Rattus norvegicus ENSRNOG00000045764 I
Sakowv30045758m.g Saccoglossus kowalevskii Sakowv30045758m.g I
ENSSHAG00000002308 Sarcophilus harrisii ENSSHAG00000002308 I
ENSSHAG00000012293 Sarcophilus harrisii ENSSHAG00000012293 I
CXXC5 Sorex araneus ENSSARG00000013369 I
ENSSSCG00000009159 Sus scrofa ENSSSCG00000009159 I
ENSSSCG00000014357 Sus scrofa ENSSSCG00000014357 I
CXXC4 Sus scrofa ENSSSCG00000025621 I
CXXC5 Taeniopygia guttata ENSTGUG00000001608 I
ENSTGUG00000003779 Taeniopygia guttata ENSTGUG00000003779 I
cxxc4 Takifugu rubripes ENSTRUG00000004403 I
cxxc5a Takifugu rubripes ENSTRUG00000017014 I
ENSTRUG00000017756 Takifugu rubripes ENSTRUG00000017756 I
cxxc5b Tetraodon nigroviridis ENSTNIG00000000647 I
ENSTNIG00000018036 Tetraodon nigroviridis ENSTNIG00000018036 I
CXXC5 Tupaia belangeri ENSTBEG00000006970 I
CXXC5 Tursiops truncatus ENSTTRG00000003771 I
CXXC4 Tursiops truncatus ENSTTRG00000011432 I
ENSVPAG00000010751 Vicugna pacos ENSVPAG00000010751 I
BAC58028 Xenopus laevis BAC58028 I
cxxc4 Xenopus tropicalis XB-GENE-479477 I
ENSXMAG00000005442 Xiphophorus maculatus ENSXMAG00000005442 I
ENSXMAG00000011127 Xiphophorus maculatus ENSXMAG00000011127 I