HDID_0000095701 (Hymenolepis diminuta)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 HDID_0000095701 T319199_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.711 0.570
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.711 0.570
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.711 0.570
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.711 0.570
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.697 0.519
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.697 0.519
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.697 0.519
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.697 0.519
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.697 0.519
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.697 0.519
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.697 0.519
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.697 0.519
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.697 0.519
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.697 0.519
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.697 0.519
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.697 0.519
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.697 0.519
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.697 0.519
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.697 0.519
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HDID_0000095701-mRNA-1 RFX 95 173

Links

Other RFX family TFs
Other Hymenolepis diminuta TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_013750 Acremonium chrysogenum ACRE_013750 I
AB10636.1 Alternaria brassicicola AB10636.1 N
M378DRAFT_197822 Amanita muscaria M378DRAFT_197822 I
AOL_s00076g272 Arthrobotrys oligospora AOL_s00076g272 N
ARB_01321 Arthroderma benhamiae ARB_01321 I
MCYG_02230 Arthroderma otae MCYG_02230 I
MCYG_05833 Arthroderma otae MCYG_05833 I
fgenesh1_pm.00168_#_452 Aspergillus carbonarius fgenesh1_pm.00168_#_452 I
fgenesh1_pm.00866_#_274 Aspergillus carbonarius fgenesh1_pm.00866_#_274 I
ACLA_070410 Aspergillus clavatus CADACLAG00006808 N
AFUA_2G11460 Aspergillus fumigatus CADAFUAG00004521 I
ANIA_05870 Aspergillus nidulans CADANIAG00007168 I
CADAORAG00008529 Aspergillus oryzae CADAORAG00008529 N
EURHEDRAFT_226967 Aspergillus ruber EURHEDRAFT_226967 I
EURHEDRAFT_513477 Aspergillus ruber EURHEDRAFT_513477 N
EURHEDRAFT_528519 Aspergillus ruber EURHEDRAFT_528519 I
ATEG_08244 Aspergillus terreus CADATEAG00003887 N
M437DRAFT_14692 Aureobasidium melanogenum M437DRAFT_14692 I
M437DRAFT_56308 Aureobasidium melanogenum M437DRAFT_56308 I
M438DRAFT_317248 Aureobasidium pullulans M438DRAFT_317248 I
M438DRAFT_323991 Aureobasidium pullulans M438DRAFT_323991 I
M438DRAFT_344531 Aureobasidium pullulans M438DRAFT_344531 I
M438DRAFT_64434 Aureobasidium pullulans M438DRAFT_64434 I
AUEXF2481DRAFT_24415 Aureobasidium subglaciale AUEXF2481DRAFT_24415 I
AUEXF2481DRAFT_4029 Aureobasidium subglaciale AUEXF2481DRAFT_4029 I
AUEXF2481DRAFT_456199 Aureobasidium subglaciale AUEXF2481DRAFT_456199 I
BAUCODRAFT_243073 Baudoinia compniacensis BAUCODRAFT_243073 N
BBA_01514 Beauveria bassiana BBA_01514 I
BBA_07071 Beauveria bassiana BBA_07071 I
BBA_09836 Beauveria bassiana BBA_09836 I
COCC4DRAFT_63629 Bipolaris maydis COCC4DRAFT_63629 N
COCMIDRAFT_101691 Bipolaris oryzae COCMIDRAFT_101691 N
COCMIDRAFT_107123 Bipolaris oryzae COCMIDRAFT_107123 I
COCMIDRAFT_22555 Bipolaris oryzae COCMIDRAFT_22555 I
COCSADRAFT_170559 Bipolaris sorokiniana COCSADRAFT_170559 N
COCVIDRAFT_108667 Bipolaris victoriae COCVIDRAFT_108667 N
COCVIDRAFT_20649 Bipolaris victoriae COCVIDRAFT_20649 I
COCCADRAFT_34097 Bipolaris zeicola COCCADRAFT_34097 N
BDDG_02031 Blastomyces dermatitidis BDDG_02031 I
BDDG_05568 Blastomyces dermatitidis BDDG_05568 N
BDDG_09744 Blastomyces dermatitidis BDDG_09744 I
BGHDH14_bgh01598 Blumeria graminis BGHDH14_bgh01598 I
Bcin04g01240 Botrytis cinerea Bcin04g01240 I
Bcin07g01630 Botrytis cinerea Bcin07g01630 N
PVAR5_2500 Byssochlamys spectabilis PVAR5_2500 I
PVAR5_3215 Byssochlamys spectabilis PVAR5_3215 I
CLUG_01645 Candida lusitaniae CLUG_01645 N
A1O1_00594 Capronia coronata A1O1_00594 I
A1O3_07754 Capronia epimyces A1O3_07754 I
PV04_10066 Capronia semiimmersa PV04_10066 I
CERSUDRAFT_114532 Ceriporiopsis subvermispora CERSUDRAFT_114532 I
Z519_01437 Cladophialophora bantiana Z519_01437 I
PV07_01234 Cladophialophora immunda PV07_01234 I
PV07_01614 Cladophialophora immunda PV07_01614 I
PV07_03849 Cladophialophora immunda PV07_03849 N
CLUG_01645 Clavispora lusitaniae CLUG_01645 N
CIMG_04661 Coccidioides immitis CIMG_04661 I
CIMG_08192 Coccidioides immitis CIMG_08192 I
CPC735_022090 Coccidioides posadasii CPC735_022090 I
CFIO01_12268 Colletotrichum fioriniae CFIO01_12268 I
CGGC5_2102 Colletotrichum gloeosporioides CGGC5_2102 I
GLRG_02776 Colletotrichum graminicola GLRG_02776 I
CSUB01_08743 Colletotrichum sublineola CSUB01_08743 I
W97_05295 Coniosporium apollinis W97_05295 N
CCM_04341 Cordyceps militaris CCM_04341 I
e_gw1.3.1267.1 Cryphonectria parasitica e_gw1.3.1267.1 I
H072_1134 Dactylellina haptotyla H072_1134 N
DOTSEDRAFT_88360 Dothistroma septosporum DOTSEDRAFT_88360 N
A1O9_01837 Exophiala aquamarina A1O9_01837 I
A1O9_03872 Exophiala aquamarina A1O9_03872 N
HMPREF1120_08148 Exophiala dermatitidis HMPREF1120_08148 I
PV10_06359 Exophiala mesophila PV10_06359 I
PV10_09026 Exophiala mesophila PV10_09026 N
PV06_08173 Exophiala oligosperma PV06_08173 N
PV06_10546 Exophiala oligosperma PV06_10546 I
PV11_00424 Exophiala sideris PV11_00424 N
PV11_05379 Exophiala sideris PV11_05379 N
PV08_05182 Exophiala spinifera PV08_05182 N
PV05_01409 Exophiala xenobiotica PV05_01409 N
PV05_03077 Exophiala xenobiotica PV05_03077 I
PV05_03582 Exophiala xenobiotica PV05_03582 I
PV05_05867 Exophiala xenobiotica PV05_05867 N
FIBRA_03539 Fibroporia radiculosa FIBRA_03539 I
FOMPIDRAFT_1024907 Fomitopsis pinicola FOMPIDRAFT_1024907 I
FFUJ_04988 Fusarium fujikuroi FFUJ_04988 I
FGRRES_02854 Fusarium graminearum FGRRES_02854 I
FGRRES_06160 Fusarium graminearum FGRRES_06160 I
FOXG_08550 Fusarium oxysporum FOXG_08550 I
FPSE_02512 Fusarium pseudograminearum FPSE_02512 I
FPSE_05530 Fusarium pseudograminearum FPSE_05530 I
NechaG103398 Fusarium solani NechaG103398 I
GGTG_02947 Gaeumannomyces graminis GGTG_02947 N
GALMADRAFT_249209 Galerina marginata GALMADRAFT_249209 I
M413DRAFT_441943 Hebeloma cylindrosporum M413DRAFT_441943 I
HCBG_03369 Histoplasma capsulatum HCBG_03369 N
HCBG_04284 Histoplasma capsulatum HCBG_04284 N
JAAARDRAFT_136956 Jaapia argillacea JAAARDRAFT_136956 I
Kwal_6732 Kluyveromyces waltii Kwal_6732 I
KUCA_T00002773001 Kuraishia capsulata KUCA_T00002773001 I
LEMA_P057360.1 Leptosphaeria maculans LEMA_P057360.1 N
LELG_02863 Lodderomyces elongisporus LELG_02863 N
MPH_01921 Macrophomina phaseolina MPH_01921 I
MPH_05611 Macrophomina phaseolina MPH_05611 N
MGG_05153 Magnaporthe oryzae MGG_05153 I
MGG_07131 Magnaporthe oryzae MGG_07131 I
MAPG_00887 Magnaporthe poae MAPG_00887 N
MBM_01678 Marssonina brunnea MBM_01678 I
MAC_00726 Metarhizium acridum MAC_00726 N
MAC_02441 Metarhizium acridum MAC_02441 I
MAM_03911 Metarhizium album MAM_03911 N
MANI_020691 Metarhizium anisopliae MANI_020691 N
MBR_00349 Metarhizium brunneum MBR_00349 N
MGU_01192 Metarhizium guizhouense MGU_01192 N
MAJ_01716 Metarhizium majus MAJ_01716 N
X797_005336 Metarhizium robertsii X797_005336 N
X797_008651 Metarhizium robertsii X797_008651 I
MCYG_02230 Microsporum canis MCYG_02230 I
MCYG_05833 Microsporum canis MCYG_05833 I
MGYG_02927 Microsporum gypseum MGYG_02927 I
MGYG_06143 Microsporum gypseum MGYG_06143 I
Moror_6819 Moniliophthora roreri Moror_6819 I
MYCTH_73708 Myceliophthora thermophila MYCTH_73708 I
gw1.59.15.1 Mycosphaerella fijiensis gw1.59.15.1 N
estExt_fgenesh1_pm.C_chr_50216 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_50216 N
estExt_fgenesh1_pm.C_sca_18_chr2_1_00326 Nectria haematococca estExt_fgenesh1_pm.C_sca_18_chr2_1_00326 I
UCRNP2_3613 Neofusicoccum parvum UCRNP2_3613 N
NFIA_086700 Neosartorya fischeri CADNFIAG00008233 I
HPODL_04541 Ogataea parapolymorpha HPODL_04541 N
OIDMADRAFT_109168 Oidiodendron maius OIDMADRAFT_109168 I
OIDMADRAFT_152619 Oidiodendron maius OIDMADRAFT_152619 N
OCS_01600 Ophiocordyceps sinensis OCS_01600 I
F503_05786 Ophiostoma piceae uamh F503_05786 I
PABG_00737 Paracoccidioides brasiliensis PABG_00737 I
PABG_03226 Paracoccidioides brasiliensis PABG_03226 N
PAAG_02753 Paracoccidioides sp lutzii PAAG_02753 N
PAAG_03678 Paracoccidioides sp lutzii PAAG_03678 I
PAXRUDRAFT_132889 Paxillus rubicundulus PAXRUDRAFT_132889 I
Pc15g00340 Penicillium chrysogenum Pc15g00340 N
PDIP_10950 Penicillium digitatum PDIP_10950 N
PEX1_002010 Penicillium expansum PEX1_002010 N
PEX1_066340 Penicillium expansum PEX1_066340 I
PITC_033600 Penicillium italicum PITC_033600 I
PITC_071780 Penicillium italicum PITC_071780 N
PMAA_014320 Penicillium marneffei PMAA_014320 N
PMAA_041870 Penicillium marneffei PMAA_041870 I
PMAA_048690 Penicillium marneffei PMAA_048690 N
PDE_06431 Penicillium oxalicum PDE_06431 N
PDE_08558 Penicillium oxalicum PDE_08558 I
PDE_09179 Penicillium oxalicum PDE_09179 I
PCH_Pc15g00340 Penicillium rubens PCH_Pc15g00340 N
U727_00433201101 Penicillium solitum U727_00433201101 N
U727_00434270371 Penicillium solitum U727_00434270371 I
PFICI_05184 Pestalotiopsis fici PFICI_05184 I
SNOG_09854 Phaeosphaeria nodorum SNOG_09854 I
SNOG_13663 Phaeosphaeria nodorum SNOG_13663 N
PILCRDRAFT_51 Piloderma croceum PILCRDRAFT_51 I
PISMIDRAFT_675317 Pisolithus microcarpus PISMIDRAFT_675317 I
M404DRAFT_130508 Pisolithus tinctorius M404DRAFT_130508 I
PLEOSDRAFT_158391 Pleurotus ostreatus PLEOSDRAFT_158391 I
MYCFIDRAFT_216484 Pseudocercospora fijiensis MYCFIDRAFT_216484 N
GMDG_07447 Pseudogymnoascus destructans GMDG_07447 N
V499_04479 Pseudogymnoascus pannorum V499_04479 N
PTT_11312 Pyrenophora teres PTT_11312 N
PTRG_11285 Pyrenophora triticirepentis PTRG_11285 N
V565_106980 Rhizoctonia solani V565_106980 N
SAPIO_CDS4281 Scedosporium apiospermum SAPIO_CDS4281 N
SAPIO_CDS7129 Scedosporium apiospermum SAPIO_CDS7129 N
SPOG_02829 Schizosaccharomyces cryophilus SPOG_02829 I
SJAG_00926 Schizosaccharomyces japonicus SJAG_00926 I
SOCG_00244 Schizosaccharomyces octosporus SOCG_00244 I
gsf1 Schizosaccharomyces pombe SPBC15D4.02 I
SS1G_01353 Sclerotinia sclerotiorum SS1G_01353 N
SERLA73DRAFT_159962 Serpula lacrymans SERLA73DRAFT_159962 I
SETTUDRAFT_172422 Setosphaeria turcica SETTUDRAFT_172422 N
SPAPADRAFT_61965 Spathaspora passalidarum SPAPADRAFT_61965 N
SEPMUDRAFT_150864 Sphaerulina musiva SEPMUDRAFT_150864 N
SEPMUDRAFT_92213 Sphaerulina musiva SEPMUDRAFT_92213 I
S40288_06232 Stachybotrys chartarum S40288_06232 I
S40285_00977 Stachybotrys chlorohalonata S40285_00977 I
SNOG_00909 Stagonospora nodorum SNOG_00909 I
SNOG_09854 Stagonospora nodorum SNOG_09854 I
SNOG_13663 Stagonospora nodorum SNOG_13663 N
PMAA_014320 Talaromyces marneffei PMAA_014320 N
PMAA_041870 Talaromyces marneffei PMAA_041870 I
PMAA_048690 Talaromyces marneffei PMAA_048690 N
TSTA_038740 Talaromyces stipitatus TSTA_038740 I
TSTA_076120 Talaromyces stipitatus TSTA_076120 I
TSTA_122850 Talaromyces stipitatus TSTA_122850 I
THITE_2115656 Thielavia terrestris THITE_2115656 I
VHEMI02171 Torrubiella hemipterigena VHEMI02171 I
VHEMI03513 Torrubiella hemipterigena VHEMI03513 I
BN946_scf184775.g19 Trametes cinnabarina BN946_scf184775.g19 N
TRIATDRAFT_34316 Trichoderma atroviride TRIATDRAFT_34316 I
TRIREDRAFT_53106 Trichoderma reesei TRIREDRAFT_53106 I
TRIREDRAFT_55274 Trichoderma reesei TRIREDRAFT_55274 I
TRIVIDRAFT_28488 Trichoderma virens TRIVIDRAFT_28488 N
TEQG_05320 Trichophyton equinum TEQG_05320 I
TEQG_06790 Trichophyton equinum TEQG_06790 I
H101_03862 Trichophyton interdigitale H101_03862 I
H101_07358 Trichophyton interdigitale H101_07358 I
H102_03415 Trichophyton rubrum H102_03415 I
H105_03436 Trichophyton soudanense H105_03436 I
TESG_06426 Trichophyton tonsurans TESG_06426 I
TESG_06981 Trichophyton tonsurans TESG_06981 I
TRV_07383 Trichophyton verrucosum TRV_07383 I
VDBG_02399 Verticillium albo atrum VDBG_02399 I
VDBG_02399 Verticillium alfalfae VDBG_02399 I
VDAG_08992 Verticillium dahliae VDAG_08992 I
YALI0_D23045g Yarrowia lipolytica YALI0_D23045g I
Mycgr3G100243 Zymoseptoria tritici Mycgr3G100243 N