RUNX1 (Loxodonta africana)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSLAFG00000004290 T319402_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		1.000 1.000
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		1.000 1.000
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		1.000 1.000
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		1.000 1.000
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		1.000 1.000
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		1.000 1.000
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		1.000 1.000
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		1.000 1.000
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		1.000 1.000
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		1.000 1.000
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		1.000 1.000
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		1.000 1.000
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.931 0.931
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.931 0.931
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.931 0.931
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.931 0.931
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.931 0.931
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.931 0.931
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.931 0.931
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.931 0.931
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.931 0.931
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.931 0.931
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.931 0.931
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.931 0.931
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.923 0.923
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.923 0.923
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.923 0.923
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.923 0.923
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.923 0.923
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.923 0.923
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.923 0.923
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.923 0.923
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.923 0.923
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.923 0.923
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.923 0.923
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.923 0.923
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.731 0.731
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.731 0.731
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.731 0.731
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000003579 Runt 51 180

Links

Other Runt family TFs
Other Loxodonta africana TFs

328 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005262 Ailuropoda melanoleuca ENSAMEG00000005262 I 0.000
ENSAPLG00000004350 Anas platyrhynchos ENSAPLG00000004350 I 0.000
MXI1 Anolis carolinensis ENSACAG00000006009 I 0.000
Afo_R002778 Aptenodytes forsteri Afo_R002778 I 0.000
ENSBTAP00000048182-D1 Bos grunniens ENSBTAP00000048182-D1 I 0.000
MXI1 Bos taurus ENSBTAG00000017263 I 0.000
MXI1 Callithrix jacchus ENSCJAG00000018614 I 0.000
MXI1 Canis familiaris ENSCAFG00000010706 I 0.000
MXI1 Cavia porcellus ENSCPOG00000022901 I 0.000
Cmyd_10011617 Chelonia mydas Cmyd_10011617 N 0.000
ENSCSAG00000005171 Chlorocebus sabaeus ENSCSAG00000005171 I 0.000
MXI1 Choloepus hoffmanni ENSCHOG00000006556 I 0.000
MXI1 Dasypus novemcinctus ENSDNOG00000002479 I 0.000
Mxi1 Dipodomys ordii ENSDORG00000005656 I 0.000
MXI1 Felis catus ENSFCAG00000004882 I 0.000
ENSFALG00000002308 Ficedula albicollis ENSFALG00000002308 I 0.000
MXI1 Gallus gallus ENSGALG00000008555 I 0.000
Gfo_R002259 Geospiza fortis Gfo_R002259 I 0.000
MXI1 Gorilla gorilla ENSGGOG00000013614 I 0.000
HHAL004586-PA Halyomorpha halys HHAL004586-PA N 0.000
Hsal_06326--XP_001122605.1_APIME Harpegnathos saltator Hsal_06326--XP_001122605.1_APIME N 0.000
MXI1 Homo sapiens ENSG00000119950 D 0.000
ENSSTOG00000025776 Ictidomys tridecemlineatus ENSSTOG00000025776 I 0.000
MXI1 Loxodonta africana ENSLAFG00000014348 I 0.000
ENSP00000331152 Macaca fascicularis ENSP00000331152 I 0.000
MXI1 Macaca mulatta ENSMMUG00000014350 I 0.000
MXI1 Meleagris gallopavo ENSMGAG00000010768 I 0.000
MXI1 Monodelphis domestica ENSMODG00000010546 I 0.000
ENSMPUG00000002095 Mustela putorius furo ENSMPUG00000002095 I 0.000
Mxi1 Mus musculus ENSMUSG00000025025 D 0.000
Myotis_brandtii_Mxi1_10027965 Myotis brandtii Myotis_brandtii_Mxi1_10027965 I 0.000
ENSMLUG00000016004 Myotis lucifugus ENSMLUG00000016004 I 0.000
ENSNLEG00000015457 Nomascus leucogenys ENSNLEG00000015457 I 0.000
Ogr11151 Ophisaurus gracilis Ogr11151 I 0.000
MXI1 Ornithorhynchus anatinus ENSOANG00000001600 I 0.000
MXI1 Otolemur garnettii ENSOGAG00000000570 I 0.000
ENSOARG00000009456 Ovis aries ENSOARG00000009456 I 0.000
MXI1 Pan troglodytes ENSPTRG00000002936 I 0.000
ENSPANG00000020804 Papio anubis ENSPANG00000020804 I 0.000
ENSPSIG00000012742 Pelodiscus sinensis ENSPSIG00000012742 I 0.000
Pvit_07222 Pogona vitticeps Pvit_07222 I 0.000
MXI1 Pteropus vampyrus ENSPVAG00000014983 I 0.000
Mxi1 Rattus norvegicus ENSRNOG00000034078 I 0.000
ENSSHAG00000015280 Sarcophilus harrisii ENSSHAG00000015280 N 0.000
MXI1 Sus scrofa ENSSSCG00000022128 N 0.000
ENSTGUG00000015302 Taeniopygia guttata ENSTGUG00000015302 I 0.000
ENSTGUG00000010598 Taeniopygia guttata ENSTGUG00000010598 I 0.000
mxd1 Takifugu rubripes ENSTRUG00000014843 N 0.000
ENSTSYG00000006623 Tarsius syrichta ENSTSYG00000006623 I 0.000
MXI1 Tursiops truncatus ENSTTRG00000007895 I 0.000
Tal_R006513 Tyto alba Tal_R006513 I 0.000
MXI1 Vicugna pacos ENSVPAG00000003400 I 0.000