ENSXMAG00000006715 (Xiphophorus maculatus)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSXMAG00000006715 T319519_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.738 0.738
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.738 0.738
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.738 0.738
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.738 0.738
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.738 0.738
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.738 0.738
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.738 0.738
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.738 0.738
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.738 0.738
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.738 0.738
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.738 0.738
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.738 0.738
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.723 0.723
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.723 0.723
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.723 0.723
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.723 0.723
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.723 0.723
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.723 0.723
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.723 0.723
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.723 0.723
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.723 0.723
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.723 0.723
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.723 0.723
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.723 0.723
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.723 0.723
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.723 0.723
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.723 0.723
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.723 0.723
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.723 0.723
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.723 0.723
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.723 0.723
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.723 0.723
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.723 0.723
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.723 0.723
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.723 0.723
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000006725 Runt 42 172

Links

Other Runt family TFs
Other Xiphophorus maculatus TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005235 Ailuropoda melanoleuca ENSAMEG00000005235 N 0.000
Alligator_sinensis_CCG000203.1 Alligator sinensis Alligator_sinensis_CCG000203.1 N 0.000
USF3 Anolis carolinensis ENSACAG00000006745 N 0.000
Afo_R005482 Aptenodytes forsteri Afo_R005482 N 0.000
ENSP00000420721-D1 Bos grunniens ENSP00000420721-D1 N 0.000
USF3 Bos taurus ENSBTAG00000021000 N 0.000
Brh_R007650 Buceros rhinoceros Brh_R007650 N 0.000
USF3 Callithrix jacchus ENSCJAG00000020264 N 0.000
USF3 Canis familiaris ENSCAFG00000010692 N 0.000
ENSCPOG00000006428 Cavia porcellus ENSCPOG00000006428 N 0.000
ENSCSAG00000006785 Chlorocebus sabaeus ENSCSAG00000006785 N 0.000
usf3 Danio rerio ENSDARG00000077431 N 0.000
USF3 Dasypus novemcinctus ENSDNOG00000040900 N 0.000
USF3 Equus caballus ENSECAG00000024549 N 0.000
USF3 Felis catus ENSFCAG00000004876 N 0.000
ENSFALG00000005129 Ficedula albicollis ENSFALG00000005129 N 0.000
ENSGMOG00000015548 Gadus morhua ENSGMOG00000015548 N 0.000
ENSGALG00000014808 Gallus gallus ENSGALG00000014808 N 0.000
usf3 Gasterosteus aculeatus ENSGACG00000003204 N 0.000
Gfo_R000246 Geospiza fortis Gfo_R000246 N 0.000
USF3 Gorilla gorilla ENSGGOG00000001005 N 0.000
USF3 Homo sapiens ENSG00000176542 N 0.000
ENSSTOG00000029223 Ictidomys tridecemlineatus ENSSTOG00000029223 N 0.000
ENSLACG00000009844 Latimeria chalumnae ENSLACG00000009844 N 0.000
ENSLOCG00000003056 Lepisosteus oculatus ENSLOCG00000003056 N 0.000
USF3 Loxodonta africana ENSLAFG00000009455 N 0.000
ENSP00000420721 Macaca fascicularis ENSP00000420721 N 0.000
ENSMEUG00000005560 Macropus eugenii ENSMEUG00000005560 N 0.000
USF3 Meleagris gallopavo ENSMGAG00000014246 N 0.000
USF3 Monodelphis domestica ENSMODG00000018158 N 0.000
Usf3 Mus musculus ENSMUSG00000068284 N 0.000
Myotis_brandtii_KIAA2018_10016078 Myotis brandtii Myotis_brandtii_KIAA2018_10016078 N 0.000
USF3 Myotis lucifugus ENSMLUG00000004274 N 0.000
ENSNLEG00000004615 Nomascus leucogenys ENSNLEG00000004615 N 0.000
USF3 Ochotona princeps ENSOPRG00000014253 N 0.000
ENSONIG00000014090 Oreochromis niloticus ENSONIG00000014090 N 0.000
USF3 Oryctolagus cuniculus ENSOCUG00000013550 N 0.000
usf3 Oryzias latipes ENSORLG00000009097 N 0.000
USF3 Otolemur garnettii ENSOGAG00000032665 N 0.000
ENSOARG00000019468 Ovis aries ENSOARG00000019468 N 0.000
USF3 Pan troglodytes ENSPTRG00000030159 N 0.000
ENSPANG00000019193 Papio anubis ENSPANG00000019193 N 0.000
ENSPFOG00000009350 Poecilia formosa ENSPFOG00000009350 N 0.000
Pvit_04479 Pogona vitticeps Pvit_04479 N 0.000
ENSPPYG00000013537 Pongo abelii ENSPPYG00000013537 N 0.000
USF3 Pteropus vampyrus ENSPVAG00000006151 N 0.000
Usf3 Rattus norvegicus ENSRNOG00000027756 N 0.000
ENSSHAG00000006667 Sarcophilus harrisii ENSSHAG00000006667 N 0.000
USF3 Sus scrofa ENSSSCG00000011918 N 0.000
ENSTGUG00000013682 Taeniopygia guttata ENSTGUG00000013682 N 0.000
ENSTGUG00000013363 Taeniopygia guttata ENSTGUG00000013363 N 0.000
USF3 Tursiops truncatus ENSTTRG00000000281 N 0.000
Tal_R000800 Tyto alba Tal_R000800 N 0.000
USF3 Vicugna pacos ENSVPAG00000011950 N 0.000
usf3 Xenopus tropicalis XB-GENE-6459248 N 0.000
ENSXMAG00000010050 Xiphophorus maculatus ENSXMAG00000010050 N 0.000