HMEL009843 (Heliconius melpomene)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 HMEL009843 T319579_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.779 0.779
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.779 0.779
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.779 0.779
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.779 0.779
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.779 0.779
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.779 0.779
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.779 0.779
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.779 0.779
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.779 0.779
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.779 0.779
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.779 0.779
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.779 0.779
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.758 0.758
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.758 0.758
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.758 0.758
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.758 0.758
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.758 0.758
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.758 0.758
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.758 0.758
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.758 0.758
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.758 0.758
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.758 0.758
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.758 0.758
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.758 0.758
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.747 0.747
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.747 0.747
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.747 0.747
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.747 0.747
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.747 0.747
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.747 0.747
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.747 0.747
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.747 0.747
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.747 0.747
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.747 0.747
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.747 0.747
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.747 0.747
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.737 0.737
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.737 0.737
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.737 0.737
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HMEL009843-PA Runt 11 105

Links

Other Runt family TFs
Other Heliconius melpomene TFs

288 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARB_01766 Arthroderma benhamiae ARB_01766 N 0.000
MCYG_02998 Arthroderma otae MCYG_02998 N 0.000
BDDG_03994 Blastomyces dermatitidis BDDG_03994 N 0.000
Bcin14g01990 Botrytis cinerea Bcin14g01990 N 0.000
PVAR5_3926 Byssochlamys spectabilis PVAR5_3926 N 0.000
A1O1_02135 Capronia coronata A1O1_02135 N 0.000
A1O1_09140 Capronia coronata A1O1_09140 N 0.000
PV04_08544 Capronia semiimmersa PV04_08544 N 0.000
PV04_02964 Capronia semiimmersa PV04_02964 N 0.000
Z519_09902 Cladophialophora bantiana Z519_09902 N 0.000
Z519_05622 Cladophialophora bantiana Z519_05622 N 0.000
G647_06990 Cladophialophora carrionii G647_06990 N 0.000
G647_05584 Cladophialophora carrionii G647_05584 N 0.000
PV07_07329 Cladophialophora immunda PV07_07329 N 0.000
PV07_01329 Cladophialophora immunda PV07_01329 N 0.000
A1O5_08428 Cladophialophora psammophila A1O5_08428 N 0.000
A1O5_10714 Cladophialophora psammophila A1O5_10714 N 0.000
A1O7_08026 Cladophialophora yegresii A1O7_08026 N 0.000
HMPREF1541_03890 Cyphellophora europaea HMPREF1541_03890 N 0.000
EPUS_05889 Endocarpon pusillum EPUS_05889 N 0.000
A1O9_09960 Exophiala aquamarina A1O9_09960 N 0.000
PV10_03696 Exophiala mesophila PV10_03696 N 0.000
PV11_08912 Exophiala sideris PV11_08912 N 0.000
PV08_09443 Exophiala spinifera PV08_09443 N 0.000
PV05_01157 Exophiala xenobiotica PV05_01157 N 0.000
PV05_10614 Exophiala xenobiotica PV05_10614 N 0.000
Z517_10982 Fonsecaea pedrosoi Z517_10982 N 0.000
Z517_04760 Fonsecaea pedrosoi Z517_04760 N 0.000
M7I_5908 Glarea lozoyensis M7I_5908 N 0.000
HCBG_02977 Histoplasma capsulatum HCBG_02977 N 0.000
MBM_09971 Marssonina brunnea MBM_09971 N 0.000
MCYG_02998 Microsporum canis MCYG_02998 N 0.000
MGYG_00173 Microsporum gypseum MGYG_00173 N 0.000
PABG_04230 Paracoccidioides brasiliensis PABG_04230 N 0.000
V499_05613 Pseudogymnoascus pannorum V499_05613 N 0.000
Z518_00552 Rhinocladiella mackenziei Z518_00552 N 0.000
SBOR_8513 Sclerotinia borealis SBOR_8513 N 0.000
SS1G_10244 Sclerotinia sclerotiorum SS1G_10244 N 0.000
TEQG_08268 Trichophyton equinum TEQG_08268 N 0.000
H101_04894 Trichophyton interdigitale H101_04894 N 0.000
H102_08792 Trichophyton rubrum H102_08792 N 0.000
H105_08817 Trichophyton soudanense H105_08817 N 0.000
TESG_07989 Trichophyton tonsurans TESG_07989 N 0.000
TRV_01335 Trichophyton verrucosum TRV_01335 N 0.000
UREG_04562 Uncinocarpus reesii UREG_04562 N 0.000