Cagra.0799s0105 (Capsella grandiflora)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Cagra.0799s0105 T321074_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.939 0.939
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.837 0.837
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0799s0105.1.p RWP-RK 549 597

Links

Other RWP-RK family TFs
Other Capsella grandiflora TFs

415 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
COCSADRAFT_116463 Bipolaris sorokiniana COCSADRAFT_116463 N 0.000
GLRG_04092 Colletotrichum graminicola GLRG_04092 N 0.000
PV08_10196 Exophiala spinifera PV08_10196 N 0.000
FOXG_13086 Fusarium oxysporum FOXG_13086 N 0.000
FVEG_12449 Fusarium verticillioides FVEG_12449 N 0.000