Carubv10019754m.g (Capsella rubella)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Carubv10019754m.g T321096_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.918 0.918
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.816 0.816
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10019754m RWP-RK 626 674

Links

Other RWP-RK family TFs
Other Capsella rubella TFs

416 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI3G41470 Brachypodium distachyon BRADI3G41470 N
BRADI4G34800 Brachypodium distachyon BRADI4G34800 N
Ca_22941 Cicer arietinum Ca_22941 N
Cla019597 Citrullus lanatus Cla019597 N
Cucsa.157080 Cucumis sativus Cucsa.157080 N
Eucgr.K02205 Eucalyptus grandis Eucgr.K02205 N
Eucgr.I02578 Eucalyptus grandis Eucgr.I02578 N
Eucgr.G01047 Eucalyptus grandis Eucgr.G01047 N
Eucgr.H00826 Eucalyptus grandis Eucgr.H00826 N
Eucgr.G01053 Eucalyptus grandis Eucgr.G01053 N
Eucgr.G01049 Eucalyptus grandis Eucgr.G01049 N
gene01364-v1.0-hybrid Fragaria vesca gene01364-v1.0-hybrid N
MLOC_55957 Hordeum vulgare MLOC_55957 N
LPERR09G12100 Leersia perrieri LPERR09G12100 N
LPERR08G18520 Leersia perrieri LPERR08G18520 N
Lus10032004.g Linum usitatissimum Lus10032004.g N
mgf006124m Mimulus guttatus mgf006124m N
OBART08G21800 Oryza barthii OBART08G21800 N
OBART09G15890 Oryza barthii OBART09G15890 N
OB09G22520 Oryza brachyantha OB09G22520 N
ORGLA08G0227400 Oryza glaberrima ORGLA08G0227400 N
ORGLA09G0123200 Oryza glaberrima ORGLA09G0123200 N
OGLUM09G16460 Oryza glumaepatula OGLUM09G16460 N
BGIOSGA031062 Oryza indica BGIOSGA031062 N
BGIOSGA029063 Oryza indica BGIOSGA029063 N
OLONG_020119 Oryza longistaminata OLONG_020119 N
OMERI09G11810 Oryza meridionalis OMERI09G11810 N
OMERI06G13840 Oryza meridionalis OMERI06G13840 N
ONIVA09G17010 Oryza nivara ONIVA09G17010 N
ONIVA08G24840 Oryza nivara ONIVA08G24840 N
OPUNC09G14320 Oryza punctata OPUNC09G14320 N
OPUNC08G19870 Oryza punctata OPUNC08G19870 N
ORUFI09G17170 Oryza rufipogon ORUFI09G17170 N
ORUFI08G24230 Oryza rufipogon ORUFI08G24230 N
OS08G0535800 Oryza sativa OS08G0535800 N
OS09G0509100 Oryza sativa OS09G0509100 N
Pavir.J23083 Panicum virgatum Pavir.J23083 N
Pavir.J11699 Panicum virgatum Pavir.J11699 N
Pavir.J04931 Panicum virgatum Pavir.J04931 N
Pavir.Fb00689 Panicum virgatum Pavir.Fb00689 N
SELMODRAFT_69131 Selaginella moellendorffii SELMODRAFT_69131 N
SELMODRAFT_69130 Selaginella moellendorffii SELMODRAFT_69130 N
Si014408m.g Setaria italica Si014408m.g N
Si030942m.g Setaria italica Si030942m.g N
Sb03g031000 Sorghum bicolor Sb03g031000 N
Sb02g029460 Sorghum bicolor Sb02g029460 N
Traes_5BL_456C3408A Triticum aestivum Traes_5BL_456C3408A N
Traes_5DL_36AE1EF2B Triticum aestivum Traes_5DL_36AE1EF2B N
TRIUR3_25303 Triticum urartu TRIUR3_25303 N
GRMZM2G179049 Zea mays GRMZM2G179049 N
GRMZM2G100583 Zea mays GRMZM2G100583 N
GRMZM2G054277 Zea mays GRMZM2G054277 N
GRMZM2G054252 Zea mays GRMZM2G054252 N