Pavir.Ca00444 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.Ca00444 T321218_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00444.1.p RWP-RK 564 612
Pavir.Ca00444.2.p RWP-RK 433 481
Pavir.Ca00444.3.p RWP-RK 433 481
Pavir.Ca00444.4.p RWP-RK 433 481
Pavir.Ca00444.5.p RWP-RK 433 481

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

376 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CC1G_01989 Coprinopsis cinerea CC1G_01989 N 0.000
GALMADRAFT_249226 Galerina marginata GALMADRAFT_249226 N 0.000
GLOTRDRAFT_127898 Gloeophyllum trabeum GLOTRDRAFT_127898 N 0.000
M413DRAFT_441957 Hebeloma cylindrosporum M413DRAFT_441957 N 0.000
JAAARDRAFT_89965 Jaapia argillacea JAAARDRAFT_89965 N 0.000
Moror_6826 Moniliophthora roreri Moror_6826 N 0.000
PILCRDRAFT_101673 Piloderma croceum PILCRDRAFT_101673 N 0.000