Bra010949 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra010949 T322462_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.977 0.893
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.970 0.880
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.970 0.880
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra010949.1-P SBP 152 226

Links

Other SBP family TFs
Other Brassica rapa TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL003968 Aedes aegypti AAEL003968 N
AALB008486 Anopheles albimanus AALB008486 N
AARA009005 Anopheles arabiensis AARA009005 N
AATE001469 Anopheles atroparvus AATE001469 N
ACHR004577 Anopheles christyi ACHR004577 N
ACOM027442 Anopheles coluzzii ACOM027442 N
ACUA008027 Anopheles culicifacies ACUA008027 N
ADAC000396 Anopheles darlingi ADAC000396 N
ADIR009502 Anopheles dirus ADIR009502 N
AEPI007981 Anopheles epiroticus AEPI007981 N
AFAF015825 Anopheles farauti AFAF015825 N
AGAP010700 Anopheles gambiae AGAP010700 N
AMAM002480 Anopheles maculatus AMAM002480 N
AMEC018533 Anopheles melas AMEC018533 N
AMEM011057 Anopheles merus AMEM011057 N
AMIN008662 Anopheles minimus AMIN008662 N
AMIN008664 Anopheles minimus AMIN008664 N
AQUA002391 Anopheles quadriannulatus AQUA002391 N
GB49325 Apis mellifera GB49325 N
ENSAMXG00000005709 Astyanax mexicanus ENSAMXG00000005709 N
ACEP19763 Atta cephalotes ACEP19763 N
estExt_fgenesh2_pm.C_2200002 Branchiostoma floridae estExt_fgenesh2_pm.C_2200002 N
Brh_R002088 Buceros rhinoceros Brh_R002088 N
Cflo_07758--XP_396195.2_APIME Camponotus floridanus Cflo_07758--XP_396195.2_APIME N
Cmyd_10005769 Chelonia mydas Cmyd_10005769 N
CLEC009664 Cimex lectularius CLEC009664 N
swi/snf Ciona intestinalis ENSCING00000004110 N
ENSCSAVG00000004620 Ciona savignyi ENSCSAVG00000004620 N
csin106540 Clonorchis sinensis csin106540 N
CGI_10021531 Crassostrea gigas CGI_10021531 N
CpipJ_CPIJ011038 Culex pipiens CpipJ_CPIJ011038 N
CPIJ011038 Culex quinquefasciatus CPIJ011038 N
YQE_02907 Dendroctonus ponderosae YQE_02907 N
DILT_0001089701 Diphyllobothrium latum DILT_0001089701 N
DME_0000758101 Dracunculus medinensis DME_0000758101 N
ECANG7_04410 Echinococcus canadensis ECANG7_04410 N
EmuJ_001187700 Echinococcus multilocularis EmuJ_001187700 N
ENSEEUG00000014927 Erinaceus europaeus ENSEEUG00000014927 N
D915_01091 Fasciola hepatica D915_01091 N
ENSGGOG00000012841 Gorilla gorilla ENSGGOG00000012841 N
Hsal_10566--XP_396195.2_APIME Harpegnathos saltator Hsal_10566--XP_396195.2_APIME N
HMEL004008 Heliconius melpomene HMEL004008 N
TTAC_0000153401 Hydatigera taeniaeformis TTAC_0000153401 N
LDEC005088 Leptinotarsa decemlineata LDEC005088 N
LotgiG182249 Lottia gigantea LotgiG182249 N
NV15374 Nasonia vitripennis NV15374 N
Ocbimv22035363m.g Octopus bimaculoides Ocbimv22035363m.g N
T265_00769 Opisthorchis viverrini T265_00769 N
ENSPMAG00000007461 Petromyzon marinus ENSPMAG00000007461 N
Smarca5 Rattus norvegicus ENSRNOG00000021584 N
Sakowv30022101m.g Saccoglossus kowalevskii Sakowv30022101m.g N
ENSSHAG00000013518 Sarcophilus harrisii ENSSHAG00000013518 N
Sjc_0053770 Schistosoma japonicum Sjc_0053770 N
SMU15038703 Schmidtea mediterranea SMU15038703 N
SINV15598 Solenopsis invicta SINV15598 N
SPER_0000373001 Spirometra erinaceieuropaei SPER_0000373001 N
SPER_0002845401 Spirometra erinaceieuropaei SPER_0002845401 N
SMAR014171 Strigamia maritima SMAR014171 N
TsM_000501300 Taenia solium TsM_000501300 N
ENSTGUG00000015201 Taeniopygia guttata ENSTGUG00000015201 N
ENSTSYG00000004240 Tarsius syrichta ENSTSYG00000004240 N
tetur03g08660 Tetranychus urticae tetur03g08660 N
ENSVPAG00000010492 Vicugna pacos ENSVPAG00000010492 N
L798_15354 Zootermopsis nevadensis L798_15354 N