Bra021094 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra021094 T322466_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.939 0.893
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.939 0.893
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.939 0.893
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.928 0.707
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.928 0.707
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.928 0.707
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.922 0.787
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.921 0.707
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.921 0.707
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.921 0.707
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.918 0.680
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.918 0.693
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.913 0.680
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.911 0.680
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.910 0.600
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.906 0.733
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.903 0.707
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.887 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra021094.1-P SBP 61 135

Links

Other SBP family TFs
Other Brassica rapa TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000011241 Ailuropoda melanoleuca ENSAMEG00000011241 N
ZSCAN21 Bos taurus ENSBTAG00000030956 N
ENSCJAG00000015664 Callithrix jacchus ENSCJAG00000015664 I
ZSCAN21 Canis familiaris ENSCAFG00000028916 N
ZSCAN21 Cavia porcellus ENSCPOG00000015351 N
ENSCSAG00000017830 Chlorocebus sabaeus ENSCSAG00000017830 N
Zscan21 Dipodomys ordii ENSDORG00000009833 N
ZSCAN21 Equus caballus ENSECAG00000024642 N
ZSCAN21 Felis catus ENSFCAG00000029089 N
ZSCAN21 Gorilla gorilla ENSGGOG00000011448 N
ZSCAN21 Homo sapiens ENSG00000166529 N
ENSSTOG00000021741 Ictidomys tridecemlineatus ENSSTOG00000021741 N
ENSMMUP00000018505 Macaca fascicularis ENSMMUP00000018505 N
ZSCAN21 Macaca mulatta ENSMMUG00000014082 N
ZSCAN21 Microcebus murinus ENSMICG00000003959 N
ENSMPUG00000010896 Mustela putorius furo ENSMPUG00000010896 N
Zscan21 Mus musculus ENSMUSG00000037017 N
Myotis_brandtii_Zscan21_10002830 Myotis brandtii Myotis_brandtii_Zscan21_10002830 N
ENSNLEG00000011354 Nomascus leucogenys ENSNLEG00000011354 N
ENSOCUG00000015340 Oryctolagus cuniculus ENSOCUG00000015340 N
ZSCAN21 Otolemur garnettii ENSOGAG00000016311 N
ENSOARG00000017953 Ovis aries ENSOARG00000017953 N
ZSCAN21 Pan troglodytes ENSPTRG00000019469 N
ENSPANG00000008154 Papio anubis ENSPANG00000008154 N
ENSPPYG00000017395 Pongo abelii ENSPPYG00000017395 N
ZSCAN21 Procavia capensis ENSPCAG00000005227 N
Zscan21 Rattus norvegicus ENSRNOG00000039234 N
ENSSSCG00000009866 Sus scrofa ENSSSCG00000009866 N
ENSSSCG00000021941 Sus scrofa ENSSSCG00000021941 N
ENSTSYG00000006410 Tarsius syrichta ENSTSYG00000006410 N
ZSCAN21 Tupaia belangeri ENSTBEG00000012971 N
ENSTBEG00000016819 Tupaia belangeri ENSTBEG00000016819 N
ZSCAN21 Tursiops truncatus ENSTTRG00000012309 N
ZSCAN21 Vicugna pacos ENSVPAG00000004514 N