Cagra.16630s0008 (Capsella grandiflora)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cagra.16630s0008 T323403_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.979 0.840
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.977 0.947
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.977 0.947
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.977 0.947
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.971 0.800
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.969 0.907
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.967 0.827
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.967 0.827
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.967 0.827
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.967 0.827
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.964 0.813
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.961 0.813
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.948 0.720
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.944 0.720
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.938 0.680
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.938 0.680
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.938 0.680
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.933 0.693
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.933 0.693
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.933 0.693
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.16630s0008.1.p SBP 145 219

Links

Other SBP family TFs
Other Capsella grandiflora TFs

497 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_121841 Agaricus bisporus AGABI2DRAFT_121841 N
M378DRAFT_335299 Amanita muscaria M378DRAFT_335299 N
BOTBODRAFT_462541 Botryobasidium botryosum BOTBODRAFT_462541 N
CERSUDRAFT_116480 Ceriporiopsis subvermispora CERSUDRAFT_116480 N
CC1G_01569 Coprinopsis cinerea CC1G_01569 N
DACRYDRAFT_54061 Dacryopinax sp DACRYDRAFT_54061 N
DICSQDRAFT_147115 Dichomitus squalens DICSQDRAFT_147115 N
FOMPIDRAFT_1130876 Fomitopsis pinicola FOMPIDRAFT_1130876 N
GALMADRAFT_224580 Galerina marginata GALMADRAFT_224580 N
GLOTRDRAFT_18412 Gloeophyllum trabeum GLOTRDRAFT_18412 N
GYMLUDRAFT_145769 Gymnopus luxurians GYMLUDRAFT_145769 N
GYMLUDRAFT_59059 Gymnopus luxurians GYMLUDRAFT_59059 N
M413DRAFT_251633 Hebeloma cylindrosporum M413DRAFT_251633 N
HETIRDRAFT_322707 Heterobasidion irregulare HETIRDRAFT_322707 N
HYDPIDRAFT_177790 Hydnomerulius pinastri HYDPIDRAFT_177790 N
JAAARDRAFT_36799 Jaapia argillacea JAAARDRAFT_36799 N
K443DRAFT_384813 Laccaria amethystina K443DRAFT_384813 N
LACBIDRAFT_293949 Laccaria bicolor LACBIDRAFT_293949 N
MPER_02700 Moniliophthora perniciosa MPER_02700 N
Moror_9126 Moniliophthora roreri Moror_9126 N
PAXINDRAFT_171258 Paxillus involutus PAXINDRAFT_171258 N
PAXRUDRAFT_13038 Paxillus rubicundulus PAXRUDRAFT_13038 N
PHACADRAFT_260812 Phanerochaete carnosa PHACADRAFT_260812 N
PILCRDRAFT_820945 Piloderma croceum PILCRDRAFT_820945 N
PILCRDRAFT_88827 Piloderma croceum PILCRDRAFT_88827 N
PISMIDRAFT_111299 Pisolithus microcarpus PISMIDRAFT_111299 N
PLEOSDRAFT_1059069 Pleurotus ostreatus PLEOSDRAFT_1059069 N
POSPLDRAFT_90448 Postia placenta POSPLDRAFT_90448 N
SCHCODRAFT_86018 Schizophyllum commune SCHCODRAFT_86018 N
SCHCODRAFT_66326 Schizophyllum commune SCHCODRAFT_66326 N
SCLCIDRAFT_18361 Scleroderma citrinum SCLCIDRAFT_18361 N
SERLA73DRAFT_65990 Serpula lacrymans SERLA73DRAFT_65990 N
M422DRAFT_51716 Sphaerobolus stellatus M422DRAFT_51716 N
CY34DRAFT_557025 Suillus luteus CY34DRAFT_557025 N
BN946_scf184902.g31 Trametes cinnabarina BN946_scf184902.g31 N