Carubv10009364m.g (Capsella rubella)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Carubv10009364m.g T323412_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.983 0.933
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.983 0.933
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.977 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009364m SBP 176 250
Carubv10009923m SBP 67 141

Links

Other SBP family TFs
Other Capsella rubella TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000009571 Ailuropoda melanoleuca ENSAMEG00000009571 N
Alligator_sinensis_CCG018823.1 Alligator sinensis Alligator_sinensis_CCG018823.1 N
ENSAPLG00000006697 Anas platyrhynchos ENSAPLG00000006697 N
ZHX3 Anolis carolinensis ENSACAG00000011460 N
Afo_R009777 Aptenodytes forsteri Afo_R009777 N
ENSP00000380144-D1 Bos grunniens ENSP00000380144-D1 N
ZHX3 Bos taurus ENSBTAG00000017594 N
ZHX3 Callithrix jacchus ENSCJAG00000018012 N
Aan_R003309 Calypte anna Aan_R003309 N
ZHX3 Canis familiaris ENSCAFG00000009101 N
ZHX3 Cavia porcellus ENSCPOG00000002738 N
Cmyd_10015207 Chelonia mydas Cmyd_10015207 N
ENSCSAG00000013961 Chlorocebus sabaeus ENSCSAG00000013961 N
ZHX3 Choloepus hoffmanni ENSCHOG00000009000 N
ZHX3 Dasypus novemcinctus ENSDNOG00000005387 N
Zhx3 Dipodomys ordii ENSDORG00000012139 N
ZHX3 Echinops telfairi ENSETEG00000005517 N
ZHX3 Felis catus ENSFCAG00000009034 N
ENSFALG00000005566 Ficedula albicollis ENSFALG00000005566 N
ENSGALG00000027603 Gallus gallus ENSGALG00000027603 N
ZHX3 Homo sapiens ENSG00000174306 N
ENSSTOG00000011674 Ictidomys tridecemlineatus ENSSTOG00000011674 N
ENSLACG00000019016 Latimeria chalumnae ENSLACG00000019016 N
ENSLOCG00000004596 Lepisosteus oculatus ENSLOCG00000004596 N
ZHX3 Loxodonta africana ENSLAFG00000022196 N
ENSMMUP00000037938 Macaca fascicularis ENSMMUP00000037938 N
ZHX3 Macaca mulatta ENSMMUG00000005904 N
ZHX3 Monodelphis domestica ENSMODG00000000636 N
ENSMPUG00000017699 Mustela putorius furo ENSMPUG00000017699 N
Zhx3 Mus musculus ENSMUSG00000035877 N
Myotis_brandtii_ZHX3_10025211 Myotis brandtii Myotis_brandtii_ZHX3_10025211 N
ZHX3 Myotis lucifugus ENSMLUG00000010226 N
ENSNLEG00000006488 Nomascus leucogenys ENSNLEG00000006488 N
ZHX3 Ochotona princeps ENSOPRG00000014931 N
Ogr10588 Ophisaurus gracilis Ogr10588 N
ZHX3 Ornithorhynchus anatinus ENSOANG00000014351 N
ZHX3 Oryctolagus cuniculus ENSOCUG00000006439 N
ZHX3 Otolemur garnettii ENSOGAG00000013363 N
ZHX3 Pan troglodytes ENSPTRG00000013501 N
ENSPANG00000023855 Papio anubis ENSPANG00000023855 N
ENSPSIG00000010741 Pelodiscus sinensis ENSPSIG00000010741 N
Pvit_08734 Pogona vitticeps Pvit_08734 N
ENSPPYG00000011012 Pongo abelii ENSPPYG00000011012 N
Zhx3 Rattus norvegicus ENSRNOG00000027988 N
ZHX3 Sorex araneus ENSSARG00000005424 N
ZHX3 Taeniopygia guttata ENSTGUG00000004817 N
ZHX3 Tursiops truncatus ENSTTRG00000002687 N