gene22888-v1.0-hybrid (Fragaria vesca)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 gene22888-v1.0-hybrid T323485_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.963 0.813
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.961 0.827
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.961 0.827
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.961 0.827
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.948 0.787
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.947 0.747
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.943 0.773
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.942 0.787
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.942 0.787
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.942 0.787
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.941 0.773
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.938 0.773
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.915 0.680
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.910 0.613
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.909 0.707
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.901 0.680
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.901 0.680
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.901 0.680
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.899 0.653
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.899 0.653
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.899 0.653
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna22888.1-v1.0-hybrid SBP 150 224

Links

Other SBP family TFs
Other Fragaria vesca TFs

437 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_013080 Acremonium chrysogenum ACRE_013080 I
ARB_05956 Arthroderma benhamiae ARB_05956 I
MCYG_02695 Arthroderma otae MCYG_02695 I
e_gw1.00710.230.1 Aspergillus carbonarius e_gw1.00710.230.1 I
ACLA_055970 Aspergillus clavatus CADACLAG00005179 I
CADAFLAG00008024 Aspergillus flavus CADAFLAG00008024 I
AFUA_4G02940 Aspergillus fumigatus CADAFUAG00001401 I
CADANGAG00011236 Aspergillus niger CADANGAG00011236 I
CADAORAG00000177 Aspergillus oryzae CADAORAG00000177 I
EURHEDRAFT_411156 Aspergillus ruber EURHEDRAFT_411156 I
M437DRAFT_18084 Aureobasidium melanogenum M437DRAFT_18084 I
AUEXF2481DRAFT_4094 Aureobasidium subglaciale AUEXF2481DRAFT_4094 I
BAUCODRAFT_269899 Baudoinia compniacensis BAUCODRAFT_269899 I
BBA_00488 Beauveria bassiana BBA_00488 I
COCC4DRAFT_40407 Bipolaris maydis COCC4DRAFT_40407 I
COCMIDRAFT_33369 Bipolaris oryzae COCMIDRAFT_33369 I
COCSADRAFT_97657 Bipolaris sorokiniana COCSADRAFT_97657 I
COCVIDRAFT_17332 Bipolaris victoriae COCVIDRAFT_17332 I
COCCADRAFT_6984 Bipolaris zeicola COCCADRAFT_6984 I
BDDG_07691 Blastomyces dermatitidis BDDG_07691 I
BGHDH14_bgh03757 Blumeria graminis BGHDH14_bgh03757 I
A1O1_02576 Capronia coronata A1O1_02576 I
A1O3_05449 Capronia epimyces A1O3_05449 I
PV04_09319 Capronia semiimmersa PV04_09319 I
CTHT_0032650 Chaetomium thermophilum CTHT_0032650 I
Z519_08509 Cladophialophora bantiana Z519_08509 I
G647_07711 Cladophialophora carrionii G647_07711 I
PV07_00488 Cladophialophora immunda PV07_00488 I
A1O5_01242 Cladophialophora psammophila A1O5_01242 I
A1O7_08736 Cladophialophora yegresii A1O7_08736 I
CIMG_08892 Coccidioides immitis CIMG_08892 I
CPC735_064040 Coccidioides posadasii CPC735_064040 I
fgenesh1_kg.C_scaffold_5000057 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_5000057 I
CFIO01_07847 Colletotrichum fioriniae CFIO01_07847 I
CGGC5_1206 Colletotrichum gloeosporioides CGGC5_1206 I
GLRG_02817 Colletotrichum graminicola GLRG_02817 I
CH063_13592 Colletotrichum higginsianum CH063_13592 I
Cob_10575 Colletotrichum orbiculare Cob_10575 I
CSUB01_02829 Colletotrichum sublineola CSUB01_02829 I
W97_04573 Coniosporium apollinis W97_04573 I
CCM_04263 Cordyceps militaris CCM_04263 I
estExt_fgenesh1_pm.C_30735 Cryphonectria parasitica estExt_fgenesh1_pm.C_30735 I
HMPREF1541_04204 Cyphellophora europaea HMPREF1541_04204 I
DOTSEDRAFT_73911 Dothistroma septosporum DOTSEDRAFT_73911 I
EPUS_01825 Endocarpon pusillum EPUS_01825 I
EV44_g4901 Erysiphe necator EV44_g4901 I
A1O9_12266 Exophiala aquamarina A1O9_12266 I
HMPREF1120_07358 Exophiala dermatitidis HMPREF1120_07358 I
PV10_04959 Exophiala mesophila PV10_04959 I
PV06_05138 Exophiala oligosperma PV06_05138 I
PV11_02396 Exophiala sideris PV11_02396 I
PV08_09059 Exophiala spinifera PV08_09059 I
PV05_00805 Exophiala xenobiotica PV05_00805 I
Z517_01506 Fonsecaea pedrosoi Z517_01506 I
FFUJ_04663 Fusarium fujikuroi FFUJ_04663 I
FGRRES_09832 Fusarium graminearum FGRRES_09832 I
FOXG_08221 Fusarium oxysporum FOXG_08221 I
FPSE_10348 Fusarium pseudograminearum FPSE_10348 I
NechaG76538 Fusarium solani NechaG76538 I
FVEG_06450 Fusarium verticillioides FVEG_06450 I
GGTG_08387 Gaeumannomyces graminis GGTG_08387 I
M7I_6846 Glarea lozoyensis M7I_6846 I
CMQ_2549 Grosmannia clavigera CMQ_2549 I
HCBG_08448 Histoplasma capsulatum HCBG_08448 I
LEMA_P075830.1 Leptosphaeria maculans LEMA_P075830.1 I
MGG_06131 Magnaporthe oryzae MGG_06131 I
MBM_06253 Marssonina brunnea MBM_06253 I
MAC_06402 Metarhizium acridum MAC_06402 I
MAM_03966 Metarhizium album MAM_03966 I
MANI_020708 Metarhizium anisopliae MANI_020708 I
MBR_00309 Metarhizium brunneum MBR_00309 I
MGU_01258 Metarhizium guizhouense MGU_01258 I
MAJ_07228 Metarhizium majus MAJ_07228 I
X797_002671 Metarhizium robertsii X797_002671 I
MCYG_02695 Microsporum canis MCYG_02695 I
MGYG_08430 Microsporum gypseum MGYG_08430 I
MYCTH_2299061 Myceliophthora thermophila MYCTH_2299061 I
fgenesh1_pg.sca_18_chr2_1_0000729 Nectria haematococca fgenesh1_pg.sca_18_chr2_1_0000729 I
NFIA_030610 Neosartorya fischeri CADNFIAG00002762 I
NCU06399 Neurospora crassa NCU06399 D
scaffold_3-snap.528.1 Neurospora discreta scaffold_3-snap.528.1 I
NEUTE1DRAFT_121024 Neurospora tetrasperma NEUTE1DRAFT_121024 I
OCS_02153 Ophiocordyceps sinensis OCS_02153 I
F503_08759 Ophiostoma piceae uamh F503_08759 I
PAAG_01597 Paracoccidioides sp lutzii PAAG_01597 I
PMAA_006130 Penicillium marneffei PMAA_006130 I
PDE_01297 Penicillium oxalicum PDE_01297 I
PFICI_05721 Pestalotiopsis fici PFICI_05721 I
SNOG_08036 Phaeosphaeria nodorum SNOG_08036 I
PODANS_3_4790 Podospora anserina PODANS_3_4790 I
PTT_12277 Pyrenophora teres PTT_12277 I
PTRG_08316 Pyrenophora triticirepentis PTRG_08316 I
Z518_05180 Rhinocladiella mackenziei Z518_05180 I
SAPIO_CDS7180 Scedosporium apiospermum SAPIO_CDS7180 I
SS1G_13065 Sclerotinia sclerotiorum SS1G_13065 I
SETTUDRAFT_96438 Setosphaeria turcica SETTUDRAFT_96438 I
SMAC_00955 Sordaria macrospora SMAC_00955 I
SEPMUDRAFT_150066 Sphaerulina musiva SEPMUDRAFT_150066 I
SPBR_00166 Sporothrix brasiliensis SPBR_00166 I
HMPREF1624_06072 Sporothrix schenckii HMPREF1624_06072 I
S40288_05306 Stachybotrys chartarum S40288_05306 I
S40285_06955 Stachybotrys chlorohalonata S40285_06955 I
SNOG_08036 Stagonospora nodorum SNOG_08036 I
PMAA_006130 Talaromyces marneffei PMAA_006130 I
TSTA_104870 Talaromyces stipitatus TSTA_104870 I
THITE_2115495 Thielavia terrestris THITE_2115495 I
VHEMI03455 Torrubiella hemipterigena VHEMI03455 I
TRIATDRAFT_168746 Trichoderma atroviride TRIATDRAFT_168746 I
TRIREDRAFT_41573 Trichoderma reesei TRIREDRAFT_41573 I
TRIVIDRAFT_192202 Trichoderma virens TRIVIDRAFT_192202 I
H102_02845 Trichophyton rubrum H102_02845 I
H105_02864 Trichophyton soudanense H105_02864 I
TRV_07458 Trichophyton verrucosum TRV_07458 I
GSTUM_00012070001 Tuber melanosporum GSTUM_00012070001 I
UREG_02800 Uncinocarpus reesii UREG_02800 I
UV8b_314 Ustilaginoidea virens UV8b_314 I
VDAG_08933 Verticillium dahliae VDAG_08933 I