Aqu1.215833 (Amphimedon queenslandica)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 Aqu1.215833 T324376_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Smad4
M05889_2.00 		Mus musculus
KCYAGACR
YGTCTRGM		 SMiLE-seq
Isakova et al.(2017)
Smad4 		0.863 0.863
Med
M06447_2.00 		Drosophila melanogaster
KCGBCDKKSHVT
ABDSMMHGVCGM		 B1H
Zhu et al.(2011)
Med_FlyReg_FBgn0011655 		0.863 0.863
SMAD4
M09377_2.00 		Homo sapiens
DRGTGNSAGACWN
NWGTCTSNCACYH		 Misc
Kulakovskiy et al.(2013)
SMAD4_HUMAN.H11MO.0.B 		0.863 0.863
Smad4
M09382_2.00 		Mus musculus
DGWGNBAGVCWN
NWGBCTVNCWCH		 Misc
Kulakovskiy et al.(2013)
SMAD4_MOUSE.H11MO.0.A 		0.863 0.863
SMAD4
M09634_2.00 		Homo sapiens
NNNYGTCTGS
SCAGACRNNN		 Misc
Heinz et al.(2010)
ESC-SMAD4_GSE29422 		0.863 0.863
Med
M09693_2.00 		Drosophila melanogaster
YYBYVYCTGYY
RRCAGRBRVRR		 Misc
Kulakovskiy et al.(2009)
Med 		0.863 0.863
SMAD4
M11275_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD4_Q4 		0.863 0.863
SMAD4
M11276_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD4_Q6_01 		0.863 0.863
SMAD4
M11277_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD4_Q6 		0.863 0.863
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PAC:15714361 SMAD 71 172

Links

Other SMAD family TFs
Other Amphimedon queenslandica TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_16738 Aegilops tauschii F775_16738 N 0.000
F775_17323 Aegilops tauschii F775_17323 N 0.000
AMTR_s00152p00031760 Amborella trichopoda AMTR_s00152p00031760 N 0.000
Aquca_075_00033 Aquilegia coerulea Aquca_075_00033 N 0.000
bZIP23 Arabidopsis lyrata scaffold_303970.1 N 0.000
bZIP19 Arabidopsis lyrata scaffold_700623.1 N 0.000
BZIP23 Arabidopsis thaliana AT2G16770 N 0.000
BZIP19 Arabidopsis thaliana AT4G35040 N 0.000
Bostr.18351s0138 Boechera stricta Bostr.18351s0138 N 0.000
Bostr.7867s1363 Boechera stricta Bostr.7867s1363 N 0.000
BRADI1G30140 Brachypodium distachyon BRADI1G30140 N 0.000
BRADI2G21197 Brachypodium distachyon BRADI2G21197 N 0.000
BRADI2G52590 Brachypodium distachyon BRADI2G52590 N 0.000
Bo1g006780 Brassica oleracea Bo1g006780 N 0.000
Bo3g091670 Brassica oleracea Bo3g091670 N 0.000
Bo3g167300 Brassica oleracea Bo3g167300 N 0.000
Bo9g024230 Brassica oleracea Bo9g024230 N 0.000
Bra011580 Brassica rapa Bra011580 N 0.000
Bra013048 Brassica rapa Bra013048 N 0.000
Bra034668 Brassica rapa Bra034668 N 0.000
Cagra.0839s0005 Capsella grandiflora Cagra.0839s0005 N 0.000
Cagra.2350s0050 Capsella grandiflora Cagra.2350s0050 N 0.000
Carubv10005538m.g Capsella rubella Carubv10005538m.g N 0.000
Carubv10014436m.g Capsella rubella Carubv10014436m.g N 0.000
evm.TU.supercontig_37.136 Carica papaya evm.TU.supercontig_37.136 N 0.000
Cla016078 Citrullus lanatus Cla016078 N 0.000
Cla020585 Citrullus lanatus Cla020585 N 0.000
Ciclev10028931m.g Citrus clementina Ciclev10028931m.g N 0.000
orange1.1g024365m.g Citrus sinensis orange1.1g024365m.g N 0.000
Cucsa.234250 Cucumis sativus Cucsa.234250 N 0.000
Cucsa.370550 Cucumis sativus Cucsa.370550 N 0.000
Eucgr.I01416 Eucalyptus grandis Eucgr.I01416 N 0.000
Thhalv10022810m.g Eutrema salsugineum Thhalv10022810m.g N 0.000
Thhalv10026007m.g Eutrema salsugineum Thhalv10026007m.g N 0.000
gene07554-v1.0-hybrid Fragaria vesca gene07554-v1.0-hybrid N 0.000
GLYMA11G11540 Glycine max GLYMA11G11540 N 0.000
GLYMA11G16050 Glycine max GLYMA11G16050 N 0.000
MLOC_13410 Hordeum vulgare MLOC_13410 N 0.000
MLOC_5655 Hordeum vulgare MLOC_5655 N 0.000
LPERR01G29490 Leersia perrieri LPERR01G29490 N 0.000
LPERR05G17340 Leersia perrieri LPERR05G17340 N 0.000
LPERR06G23100 Leersia perrieri LPERR06G23100 N 0.000
LPERR11G02130 Leersia perrieri LPERR11G02130 N 0.000
LPERR12G02240 Leersia perrieri LPERR12G02240 N 0.000
Lus10005073.g Linum usitatissimum Lus10005073.g N 0.000
Lus10014121.g Linum usitatissimum Lus10014121.g N 0.000
Lus10016368.g Linum usitatissimum Lus10016368.g N 0.000
Lus10027847.g Linum usitatissimum Lus10027847.g N 0.000
MDP0000190186 Malus domestica MDP0000190186 N 0.000
MDP0000893802 Malus domestica MDP0000893802 N 0.000
MDP0000898701 Malus domestica MDP0000898701 N 0.000
cassava766.valid.m1 Manihot esculenta cassava766.valid.m1 N 0.000
cassava767.valid.m1 Manihot esculenta cassava767.valid.m1 N 0.000
cassava7721.valid.m1 Manihot esculenta cassava7721.valid.m1 N 0.000
mgf003848m Mimulus guttatus mgf003848m N 0.000
GSMUA_Achr4G00320_001 Musa acuminata GSMUA_Achr4G00320_001 N 0.000
GSMUA_Achr4G10150_001 Musa acuminata GSMUA_Achr4G10150_001 N 0.000
GSMUA_Achr7G03840_001 Musa acuminata GSMUA_Achr7G03840_001 N 0.000
OBART01G34150 Oryza barthii OBART01G34150 N 0.000
OBART05G21450 Oryza barthii OBART05G21450 N 0.000
OBART11G02390 Oryza barthii OBART11G02390 N 0.000
OBART12G02110 Oryza barthii OBART12G02110 N 0.000
OB0044G10110 Oryza brachyantha OB0044G10110 N 0.000
OB01G42980 Oryza brachyantha OB01G42980 N 0.000
OB05G28920 Oryza brachyantha OB05G28920 N 0.000
OB12G12480 Oryza brachyantha OB12G12480 N 0.000
ORGLA01G0280700 Oryza glaberrima ORGLA01G0280700 N 0.000
ORGLA05G0186200 Oryza glaberrima ORGLA05G0186200 N 0.000
OGLUM01G38420 Oryza glumaepatula OGLUM01G38420 N 0.000
OGLUM11G02090 Oryza glumaepatula OGLUM11G02090 N 0.000
BGIOSGA004628 Oryza indica BGIOSGA004628 N 0.000
BGIOSGA017801 Oryza indica BGIOSGA017801 N 0.000
BGIOSGA034759 Oryza indica BGIOSGA034759 N 0.000
BGIOSGA036957 Oryza indica BGIOSGA036957 N 0.000
OLONG_011776 Oryza longistaminata OLONG_011776 N 0.000
OLONG_016758 Oryza longistaminata OLONG_016758 N 0.000
OMERI01G30960 Oryza meridionalis OMERI01G30960 N 0.000
OMERI12G01070 Oryza meridionalis OMERI12G01070 N 0.000
ONIVA01G38950 Oryza nivara ONIVA01G38950 N 0.000
ONIVA05G22130 Oryza nivara ONIVA05G22130 N 0.000
ONIVA11G02620 Oryza nivara ONIVA11G02620 N 0.000
OPUNC01G33180 Oryza punctata OPUNC01G33180 N 0.000
OPUNC05G19110 Oryza punctata OPUNC05G19110 N 0.000
OPUNC12G02170 Oryza punctata OPUNC12G02170 N 0.000
ORUFI01G37470 Oryza rufipogon ORUFI01G37470 N 0.000
ORUFI05G22690 Oryza rufipogon ORUFI05G22690 N 0.000
ORUFI12G02510 Oryza rufipogon ORUFI12G02510 N 0.000
OS01G0801901 Oryza sativa OS01G0801901 N 0.000
OS05G0495200 Oryza sativa OS05G0495200 N 0.000
OS11G0139500 Oryza sativa OS11G0139500 N 0.000
Pavir.Db00007 Panicum virgatum Pavir.Db00007 N 0.000
Pavir.Ea03172 Panicum virgatum Pavir.Ea03172 N 0.000
Pavir.Eb03174 Panicum virgatum Pavir.Eb03174 N 0.000
Pavir.J00911 Panicum virgatum Pavir.J00911 N 0.000
Pavir.J05283 Panicum virgatum Pavir.J05283 N 0.000
Pavir.J21984 Panicum virgatum Pavir.J21984 N 0.000
Pavir.J25286 Panicum virgatum Pavir.J25286 N 0.000
PDK_20s1365351g001 Phoenix dactylifera PDK_20s1365351g001 N 0.000
PDK_20s1623091g001 Phoenix dactylifera PDK_20s1623091g001 N 0.000
gw1.34.187.1 Physcomitrella patens gw1.34.187.1 N 0.000
POPTR_0001s05750 Populus trichocarpa POPTR_0001s05750 N 0.000
POPTR_0003s20320 Populus trichocarpa POPTR_0003s20320 N 0.000
POPTR_0009s13730 Populus trichocarpa POPTR_0009s13730 N 0.000
Pm016548 Prunus mume Pm016548 N 0.000
Pm020862 Prunus mume Pm020862 N 0.000
PRUPE_ppa009913mg Prunus persica PRUPE_ppa009913mg N 0.000
PRUPE_ppa019868mg Prunus persica PRUPE_ppa019868mg N 0.000
28095.m000094 Ricinus communis 28095.m000094 N 0.000
SapurV1A.0009s0600 Salix purpurea SapurV1A.0009s0600 N 0.000
SapurV1A.0445s0220 Salix purpurea SapurV1A.0445s0220 N 0.000
SapurV1A.0923s0130 Salix purpurea SapurV1A.0923s0130 N 0.000
SELMODRAFT_409920 Selaginella moellendorffii SELMODRAFT_409920 N 0.000
SELMODRAFT_414462 Selaginella moellendorffii SELMODRAFT_414462 N 0.000
Si002893m.g Setaria italica Si002893m.g N 0.000
Si007107m.g Setaria italica Si007107m.g N 0.000
Si037105m.g Setaria italica Si037105m.g N 0.000
Solyc01g111580.2 Solanum lycopersicum Solyc01g111580.2 N 0.000
PGSC0003DMG401006188 Solanum tuberosum PGSC0003DMG401006188 N 0.000
Sb03g037300 Sorghum bicolor Sb03g037300 N 0.000
Sb09g024290 Sorghum bicolor Sb09g024290 N 0.000
Sb10g030250 Sorghum bicolor Sb10g030250 N 0.000
TCM_042360 Theobroma cacao TCM_042360 N 0.000
Traes_1AL_00A8A2030 Triticum aestivum Traes_1AL_00A8A2030 N 0.000
TRAES3BF086800020CFD_g Triticum aestivum TRAES3BF086800020CFD_g N 0.000
Traes_5BS_FC54F9BEA Triticum aestivum Traes_5BS_FC54F9BEA N 0.000
Traes_7AL_C7CF7087B Triticum aestivum Traes_7AL_C7CF7087B N 0.000
Traes_7DL_7DDA16622 Triticum aestivum Traes_7DL_7DDA16622 N 0.000
TRIUR3_01653 Triticum urartu TRIUR3_01653 N 0.000
TRIUR3_18393 Triticum urartu TRIUR3_18393 N 0.000
TRIUR3_21208 Triticum urartu TRIUR3_21208 N 0.000
TRIUR3_23486 Triticum urartu TRIUR3_23486 N 0.000
VIT_03s0038g02420 Vitis vinifera VIT_03s0038g02420 N 0.000
ATBZIP24 Vitis vinifera VIT_13s0158g00380 N 0.000
GRMZM2G000171 Zea mays GRMZM2G000171 N 0.000
GRMZM2G033230 Zea mays GRMZM2G033230 N 0.000
GRMZM2G175870 Zea mays GRMZM2G175870 N 0.000