CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NFIB
(
Equus caballus
)
SMAD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03165 (MH1)
IPR003619
ENSECAG00000024578
T324590_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NFIB
M03479_2.00
Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIB_1
1.000
1.000
NFIB
M05747_2.00
Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX
1.000
1.000
Nfib
M09381_2.00
Mus musculus
BVWGCCARV
BYTGGCWBV
Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C
1.000
1.000
NFIB
M11280_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6_01
1.000
1.000
NFIB
M11281_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6
1.000
1.000
NFIB
M05748_2.00
Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN
SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX
1.000
1.000
NFIA
M03480_2.00
Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIA_1
0.934
0.934
NFIA
M03481_2.00
Homo sapiens
NNTGCCAANN
NNTTGGCANN
SELEX
Jolma et al.(2013)
NFIA_2
0.934
0.934
NFIA
M09379_2.00
Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C
0.934
0.934
Nfia
M09383_2.00
Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C
0.934
0.934
NFIA
M11282_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1A_Q6_01
0.934
0.934
Nfia
M11291_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFIA_02
0.934
0.934
NFIX
M03475_2.00
Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR
SELEX
Jolma et al.(2013)
NFIX_1
0.901
0.901
NFIX
M03476_2.00
Homo sapiens
NYTGGCDNN
NNHGCCARN
SELEX
Jolma et al.(2013)
NFIX_2
0.901
0.901
NFIX
M03477_2.00
Homo sapiens
NYTGGCWNN
NNWGCCARN
SELEX
Jolma et al.(2013)
NFIX_3
0.901
0.901
NFIX
M03478_2.00
Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA
SELEX
Jolma et al.(2013)
NFIX_4
0.901
0.901
NFIX
M05741_2.00
Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN
SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX
0.901
0.901
NFIX
M05742_2.00
Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN
SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX
0.901
0.901
Nfic
M09385_2.00
Mus musculus
NBYTGGCWN
NWGCCARVN
Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A
0.813
0.813
NFIC
M05745_2.00
Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN
SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX
0.802
0.802
NFIC
M08164_2.00
Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN
ChIP-seq
Mathelier et al.(2014)
MA0161.2
0.802
0.802
NFIC
M09378_2.00
Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV
Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A
0.802
0.802
NFIC
M09635_2.00
Homo sapiens
BYTGSCAV
BTGSCARV
Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished
0.802
0.802
NFIC
M09636_2.00
Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV
Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished
0.802
0.802
NFIC
M11278_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTF1_01
0.802
0.802
NFIC
M11279_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1C_Q6
0.802
0.802
NFIC
M05746_2.00
Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX
0.802
0.802
NfI
M03968_2.00
Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR
SELEX
Nitta et al.(2015)
NfI_1
0.758
0.758
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000022157
SMAD
62
166
KQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSV
Links
Other
SMAD
family TFs
Other
Equus caballus
TFs
335 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000001631
Ailuropoda melanoleuca
ENSAMEG00000001631
I
ENSAMEG00000002381
Ailuropoda melanoleuca
ENSAMEG00000002381
I
Alligator_sinensis_CCG007030.1
Alligator sinensis
Alligator_sinensis_CCG007030.1
I
Alligator_sinensis_CCG016908.1
Alligator sinensis
Alligator_sinensis_CCG016908.1
I
ENSAPLG00000013950
Anas platyrhynchos
ENSAPLG00000013950
I
ATF6
Anolis carolinensis
ENSACAG00000001336
I
ATF6B
Anolis carolinensis
ENSACAG00000010535
I
Afo_R000376
Aptenodytes forsteri
Afo_R000376
I
ENSAMXG00000010343
Astyanax mexicanus
ENSAMXG00000010343
I
ENSBTAP00000042742-D1
Bos grunniens
ENSBTAP00000042742-D1
I
ENSP00000356919-D1
Bos grunniens
ENSP00000356919-D1
I
ATF6
Bos taurus
ENSBTAG00000005227
I
ATF6B
Bos taurus
ENSBTAG00000008794
I
Brh_R005562
Buceros rhinoceros
Brh_R005562
I
ATF6
Callithrix jacchus
ENSCJAG00000004572
I
ATF6B
Callithrix jacchus
ENSCJAG00000036009
I
Aan_R002718
Calypte anna
Aan_R002718
I
ATF6B
Canis familiaris
ENSCAFG00000000761
I
ATF6
Canis familiaris
ENSCAFG00000013068
I
CapteG216503
Capitella teleta
CapteG216503
I
ATF6
Cavia porcellus
ENSCPOG00000010325
I
ENSCSAG00000002721
Chlorocebus sabaeus
ENSCSAG00000002721
I
ENSCSAG00000009237
Chlorocebus sabaeus
ENSCSAG00000009237
I
ATF6
Choloepus hoffmanni
ENSCHOG00000009031
I
atf6
Danio rerio
ENSDARG00000012656
I
ENSDNOG00000008226
Dasypus novemcinctus
ENSDNOG00000008226
I
ATF6B
Dasypus novemcinctus
ENSDNOG00000042135
I
Atf6b
Dipodomys ordii
ENSDORG00000004227
I
ATF6
Echinops telfairi
ENSETEG00000004183
I
ATF6B
Equus caballus
ENSECAG00000021507
I
ATF6
Equus caballus
ENSECAG00000022307
I
ATF6
Erinaceus europaeus
ENSEEUG00000000007
I
ATF6B
Felis catus
ENSFCAG00000018408
I
ATF6
Felis catus
ENSFCAG00000023651
I
ENSFALG00000003490
Ficedula albicollis
ENSFALG00000003490
I
ENSGMOG00000018033
Gadus morhua
ENSGMOG00000018033
I
ENSGALG00000002658
Gallus gallus
ENSGALG00000002658
I
atf6
Gasterosteus aculeatus
ENSGACG00000011702
I
Gfo_R012350
Geospiza fortis
Gfo_R012350
I
ATF6B
Gorilla gorilla
ENSGGOG00000004870
I
ATF6
Gorilla gorilla
ENSGGOG00000013807
I
ATF6
Homo sapiens
ENSG00000118217
D
ATF6B
Homo sapiens
ENSG00000213676
D
ENSSTOG00000027684
Ictidomys tridecemlineatus
ENSSTOG00000027684
I
ENSLACG00000012831
Latimeria chalumnae
ENSLACG00000012831
I
ENSLOCG00000001278
Lepisosteus oculatus
ENSLOCG00000001278
I
LotgiG236404
Lottia gigantea
LotgiG236404
I
ATF6
Loxodonta africana
ENSLAFG00000003622
I
ATF6B
Loxodonta africana
ENSLAFG00000020739
I
ENSP00000356919
Macaca fascicularis
ENSP00000356919
I
ENSP00000364349
Macaca fascicularis
ENSP00000364349
I
ATF6
Macaca mulatta
ENSMMUG00000004049
I
ATF6B
Macaca mulatta
ENSMMUG00000015229
I
ENSMEUG00000008122
Macropus eugenii
ENSMEUG00000008122
I
ATF6
Meleagris gallopavo
ENSMGAG00000005185
I
ATF6
Microcebus murinus
ENSMICG00000000038
I
ATF6
Monodelphis domestica
ENSMODG00000000980
I
ATF6B
Monodelphis domestica
ENSMODG00000014920
I
ENSMPUG00000003493
Mustela putorius furo
ENSMPUG00000003493
I
ENSMPUG00000010305
Mustela putorius furo
ENSMPUG00000010305
I
Atf6b
Mus musculus
ENSMUSG00000015461
I
Atf6
Mus musculus
ENSMUSG00000026663
I
Myotis_brandtii_ATF6_10024274
Myotis brandtii
Myotis_brandtii_ATF6_10024274
I
Myotis_brandtii_ATF6B_10007217
Myotis brandtii
Myotis_brandtii_ATF6B_10007217
I
ATF6B
Myotis lucifugus
ENSMLUG00000026641
I
ENSNLEG00000006562
Nomascus leucogenys
ENSNLEG00000006562
I
ENSNLEG00000014528
Nomascus leucogenys
ENSNLEG00000014528
I
ATF6B
Ochotona princeps
ENSOPRG00000019053
I
Ocbimv22023518m.g
Octopus bimaculoides
Ocbimv22023518m.g
I
Ogr01669
Ophisaurus gracilis
Ogr01669
I
Ogr11447
Ophisaurus gracilis
Ogr11447
I
ENSONIG00000002137
Oreochromis niloticus
ENSONIG00000002137
I
ATF6
Ornithorhynchus anatinus
ENSOANG00000009735
I
ATF6
Oryctolagus cuniculus
ENSOCUG00000007930
I
ATF6B
Oryctolagus cuniculus
ENSOCUG00000023089
I
atf6
Oryzias latipes
ENSORLG00000016676
I
ATF6
Otolemur garnettii
ENSOGAG00000001917
I
ATF6B
Otolemur garnettii
ENSOGAG00000032721
I
ENSOARG00000010418
Ovis aries
ENSOARG00000010418
I
ATF6
Pan troglodytes
ENSPTRG00000001596
I
ATF6B
Pan troglodytes
ENSPTRG00000034357
I
ENSPANG00000006897
Papio anubis
ENSPANG00000006897
I
ENSPANG00000021910
Papio anubis
ENSPANG00000021910
I
ENSPSIG00000016522
Pelodiscus sinensis
ENSPSIG00000016522
I
ENSPMAG00000007037
Petromyzon marinus
ENSPMAG00000007037
I
ENSPFOG00000018418
Poecilia formosa
ENSPFOG00000018418
I
Pvit_13420
Pogona vitticeps
Pvit_13420
I
Pvit_17701
Pogona vitticeps
Pvit_17701
I
ENSPPYG00000000589
Pongo abelii
ENSPPYG00000000589
I
ENSPPYG00000016479
Pongo abelii
ENSPPYG00000016479
I
ATF6B
Procavia capensis
ENSPCAG00000009251
I
ATF6B
Pteropus vampyrus
ENSPVAG00000005144
I
Atf6b
Rattus norvegicus
ENSRNOG00000000431
I
Atf6
Rattus norvegicus
ENSRNOG00000024632
I
Sakowv30004199m.g
Saccoglossus kowalevskii
Sakowv30004199m.g
I
ENSSHAG00000005867
Sarcophilus harrisii
ENSSHAG00000005867
I
ENSSHAG00000010010
Sarcophilus harrisii
ENSSHAG00000010010
I
ATF6B
Sus scrofa
ENSSSCG00000001430
I
ATF6
Sus scrofa
ENSSSCG00000006346
I
ATF6
Taeniopygia guttata
ENSTGUG00000017057
I
atf6
Takifugu rubripes
ENSTRUG00000006660
I
ENSTSYG00000002035
Tarsius syrichta
ENSTSYG00000002035
I
ENSTSYG00000003325
Tarsius syrichta
ENSTSYG00000003325
I
ATF6
Tupaia belangeri
ENSTBEG00000015845
I
ATF6B
Tursiops truncatus
ENSTTRG00000005958
I
ATF6
Tursiops truncatus
ENSTTRG00000008508
I
ATF6
Vicugna pacos
ENSVPAG00000004732
I
atf6.S
Xenopus laevis
XB-GENE-983817
I
atf6
Xenopus tropicalis
XB-GENE-983814
I
ENSXMAG00000013231
Xiphophorus maculatus
ENSXMAG00000013231
I
L798_08597
Zootermopsis nevadensis
L798_08597
I