TRE_0000914801 (Trichobilharzia regenti)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 TRE_0000914801 T325971_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Mad
M06446_2.00 		Drosophila melanogaster
GYGHCGBCVS
SBGVCGDCRC		 B1H
Zhu et al.(2011)
Mad_FlyReg_FBgn0011648 		0.703 0.703
Mad
M08427_2.00 		Drosophila melanogaster
SNGRCGMSRVSRBNS
SNVYSBYSKCGYCNS		 ChIP-chip
Mathelier et al.(2014)
MA0535.1 		0.703 0.703
Mad
M09692_2.00 		Drosophila melanogaster
KCBGSHGKCGCSNC
GNSGCGMCDSCVGM		 Misc
Kulakovskiy et al.(2009)
Mad 		0.703 0.703
Mad
M11293_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$MAD_Q6 		0.703 0.703
SMAD9
M11274_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_01 		0.703 0.703
Smad9
M11290_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_02 		0.703 0.703
Smad9
M11289_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_03 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TRE_0000914801-mRNA-1 SMAD 35 121
TRE_0000914801-mRNA-1 SMAD 137 162

Links

Other SMAD family TFs
Other Trichobilharzia regenti TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04112 Aegilops tauschii F775_04112 N
BRADI1G29920 Brachypodium distachyon BRADI1G29920 N
BRADI3G60870 Brachypodium distachyon BRADI3G60870 N
LPERR02G31960 Leersia perrieri LPERR02G31960 N
LPERR06G23220 Leersia perrieri LPERR06G23220 N
OBART02G38520 Oryza barthii OBART02G38520 N
OB02G45490 Oryza brachyantha OB02G45490 N
ORGLA02G0337900 Oryza glaberrima ORGLA02G0337900 N
ORGLA06G0234600 Oryza glaberrima ORGLA06G0234600 N
BGIOSGA005293 Oryza indica BGIOSGA005293 N
OLONG_006885 Oryza longistaminata OLONG_006885 N
OMERI02G36320 Oryza meridionalis OMERI02G36320 N
OMERI06G27760 Oryza meridionalis OMERI06G27760 N
ONIVA02G41380 Oryza nivara ONIVA02G41380 N
ONIVA06G30250 Oryza nivara ONIVA06G30250 N
OPUNC02G35740 Oryza punctata OPUNC02G35740 N
OPUNC06G25350 Oryza punctata OPUNC06G25350 N
ORUFI02G40230 Oryza rufipogon ORUFI02G40230 N
OS06G0719500 Oryza sativa OS06G0719500 N
OS06G0724000 Oryza sativa OS06G0724000 N
OS06G0720900 Oryza sativa OS06G0720900 N
OS02G0833600 Oryza sativa OS02G0833600 N
Pavir.J00689 Panicum virgatum Pavir.J00689 N
Pavir.J01346 Panicum virgatum Pavir.J01346 N
Pavir.J04759 Panicum virgatum Pavir.J04759 N
Si007412m.g Setaria italica Si007412m.g N
Si023448m.g Setaria italica Si023448m.g N
Sb04g038600 Sorghum bicolor Sb04g038600 N
Sb10g030400 Sorghum bicolor Sb10g030400 N
Traes_7AL_3ED7A9663 Triticum aestivum Traes_7AL_3ED7A9663 N
Traes_7DL_EECCC4DBF Triticum aestivum Traes_7DL_EECCC4DBF N
TRIUR3_05244 Triticum urartu TRIUR3_05244 N
GRMZM2G402862 Zea mays GRMZM2G402862 N
GRMZM2G073892 Zea mays GRMZM2G073892 N