BRADI5G16910 (Brachypodium distachyon)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 BRADI5G16910 T326737_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.689 0.727
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.689 0.727
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.674 0.932
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.649 0.909
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.649 0.909
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.727
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI5G16910.1 Sox 172 215

Links

Other Sox family TFs
Other Brachypodium distachyon TFs

521 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000001555 Ailuropoda melanoleuca ENSAMEG00000001555 I 0.000
ENSAMEG00000001993 Ailuropoda melanoleuca ENSAMEG00000001993 I 0.000
ENSAMEG00000012855 Ailuropoda melanoleuca ENSAMEG00000012855 I 0.000
Alligator_sinensis_CCG003670.1 Alligator sinensis Alligator_sinensis_CCG003670.1 I 0.000
Alligator_sinensis_CCG005465.1 Alligator sinensis Alligator_sinensis_CCG005465.1 I 0.000
ENSAPLG00000002810 Anas platyrhynchos ENSAPLG00000002810 I 0.000
ELK3 Anolis carolinensis ENSACAG00000013618 I 0.000
ELK4 Anolis carolinensis ENSACAG00000014244 I 0.000
Afo_R009688 Aptenodytes forsteri Afo_R009688 I 0.000
ENSAMXG00000003943 Astyanax mexicanus ENSAMXG00000003943 I 0.000
ENSAMXG00000017384 Astyanax mexicanus ENSAMXG00000017384 I 0.000
ENSBTAP00000001974-D1 Bos grunniens ENSBTAP00000001974-D1 I 0.000
ENSBTAP00000006514-D1 Bos grunniens ENSBTAP00000006514-D1 I 0.000
ELK3 Bos taurus ENSBTAG00000001509 I 0.000
ELK4 Bos taurus ENSBTAG00000004953 I 0.000
ELK1 Bos taurus ENSBTAG00000015817 I 0.000
e_gw.713.8.1 Branchiostoma floridae e_gw.713.8.1 I 0.000
Brh_R002290 Buceros rhinoceros Brh_R002290 I 0.000
ELK3 Callithrix jacchus ENSCJAG00000002592 I 0.000
ELK1 Callithrix jacchus ENSCJAG00000034978 I 0.000
Aan_R014218 Calypte anna Aan_R014218 I 0.000
ELK3 Canis familiaris ENSCAFG00000006454 I 0.000
ELK4 Canis familiaris ENSCAFG00000010144 I 0.000
ELK1 Canis familiaris ENSCAFG00000015178 I 0.000
ELK3 Cavia porcellus ENSCPOG00000005065 I 0.000
ELK1 Cavia porcellus ENSCPOG00000009149 I 0.000
ELK4 Cavia porcellus ENSCPOG00000010980 I 0.000
Cmyd_10010596 Chelonia mydas Cmyd_10010596 I 0.000
Cmyd_10011409 Chelonia mydas Cmyd_10011409 I 0.000
ENSCSAG00000003573 Chlorocebus sabaeus ENSCSAG00000003573 I 0.000
elk Ciona intestinalis ENSCING00000002179 I 0.000
ENSCSAVG00000005655 Ciona savignyi ENSCSAVG00000005655 I 0.000
elk3 Danio rerio ENSDARG00000018688 I 0.000
elk1 Danio rerio ENSDARG00000078066 I 0.000
ELK3 Dasypus novemcinctus ENSDNOG00000015979 I 0.000
ELK4 Dasypus novemcinctus ENSDNOG00000024182 I 0.000
ELK1 Dasypus novemcinctus ENSDNOG00000040701 I 0.000
Elk4 Dipodomys ordii ENSDORG00000009275 I 0.000
ENSETEG00000013109 Echinops telfairi ENSETEG00000013109 I 0.000
ELK4 Equus caballus ENSECAG00000006540 I 0.000
ELK1 Equus caballus ENSECAG00000008421 I 0.000
ELK3 Equus caballus ENSECAG00000017760 I 0.000
ELK3 Erinaceus europaeus ENSEEUG00000000290 I 0.000
ELK4 Erinaceus europaeus ENSEEUG00000003479 I 0.000
ELK1 Erinaceus europaeus ENSEEUG00000003905 I 0.000
ELK4 Felis catus ENSFCAG00000006723 I 0.000
ELK1 Felis catus ENSFCAG00000008192 I 0.000
ELK3 Felis catus ENSFCAG00000010747 I 0.000
ENSFALG00000000609 Ficedula albicollis ENSFALG00000000609 I 0.000
ENSFALG00000010890 Ficedula albicollis ENSFALG00000010890 I 0.000
ENSGMOG00000008524 Gadus morhua ENSGMOG00000008524 I 0.000
ENSGMOG00000009204 Gadus morhua ENSGMOG00000009204 I 0.000
ENSGALG00000000701 Gallus gallus ENSGALG00000000701 I 0.000
ENSGALG00000011435 Gallus gallus ENSGALG00000011435 I 0.000
elk1 Gasterosteus aculeatus ENSGACG00000000816 I 0.000
elk3 Gasterosteus aculeatus ENSGACG00000019147 I 0.000
Gfo_R005174 Geospiza fortis Gfo_R005174 I 0.000
ELK1 Gorilla gorilla ENSGGOG00000008714 I 0.000
ELK3 Homo sapiens ENSG00000111145 D 0.000
ELK1 Homo sapiens ENSG00000126767 D 0.000
ENSSTOG00000014796 Ictidomys tridecemlineatus ENSSTOG00000014796 I 0.000
ENSLACG00000006648 Latimeria chalumnae ENSLACG00000006648 I 0.000
ENSLACG00000016487 Latimeria chalumnae ENSLACG00000016487 I 0.000
ENSLACG00000017984 Latimeria chalumnae ENSLACG00000017984 I 0.000
ENSLOCG00000011817 Lepisosteus oculatus ENSLOCG00000011817 I 0.000
ENSLOCG00000014572 Lepisosteus oculatus ENSLOCG00000014572 I 0.000
ENSLOCG00000015730 Lepisosteus oculatus ENSLOCG00000015730 I 0.000
ELK3 Loxodonta africana ENSLAFG00000004269 I 0.000
ELK4 Loxodonta africana ENSLAFG00000016043 I 0.000
ENSP00000228741 Macaca fascicularis ENSP00000228741 I 0.000
ELK3 Macaca mulatta ENSMMUG00000018145 I 0.000
ENSMEUG00000005709 Macropus eugenii ENSMEUG00000005709 I 0.000
ELK3 Meleagris gallopavo ENSMGAG00000011496 I 0.000
ELK3 Microcebus murinus ENSMICG00000012211 I 0.000
ELK4 Monodelphis domestica ENSMODG00000001817 I 0.000
ELK3 Monodelphis domestica ENSMODG00000007957 I 0.000
ENSMPUG00000007067 Mustela putorius furo ENSMPUG00000007067 I 0.000
ENSMPUG00000011926 Mustela putorius furo ENSMPUG00000011926 I 0.000
Elk3 Mus musculus ENSMUSG00000008398 D 0.000
Elk4 Mus musculus ENSMUSG00000026436 D 0.000
Myotis_brandtii_ELK4_10018476 Myotis brandtii Myotis_brandtii_ELK4_10018476 I 0.000
ELK3 Myotis lucifugus ENSMLUG00000002400 I 0.000
ELK4 Myotis lucifugus ENSMLUG00000011530 I 0.000
ENSNLEG00000005910 Nomascus leucogenys ENSNLEG00000005910 I 0.000
ELK3 Ochotona princeps ENSOPRG00000004363 I 0.000
ELK4 Ochotona princeps ENSOPRG00000006348 I 0.000
Ogr07777 Ophisaurus gracilis Ogr07777 I 0.000
Ogr11326 Ophisaurus gracilis Ogr11326 I 0.000
ENSONIG00000008595 Oreochromis niloticus ENSONIG00000008595 I 0.000
ENSONIG00000011804 Oreochromis niloticus ENSONIG00000011804 I 0.000
ENSONIG00000014594 Oreochromis niloticus ENSONIG00000014594 I 0.000
ELK4 Ornithorhynchus anatinus ENSOANG00000002147 I 0.000
ENSOANG00000006606 Ornithorhynchus anatinus ENSOANG00000006606 I 0.000
elk3 Oryzias latipes ENSORLG00000004030 I 0.000
elk3 Oryzias latipes ENSORLG00000009298 I 0.000
elk1 Oryzias latipes ENSORLG00000016950 I 0.000
ELK4 Otolemur garnettii ENSOGAG00000010460 I 0.000
ELK3 Otolemur garnettii ENSOGAG00000031899 I 0.000
ENSOARG00000004182 Ovis aries ENSOARG00000004182 I 0.000
ENSOARG00000012360 Ovis aries ENSOARG00000012360 I 0.000
ELK3 Pan troglodytes ENSPTRG00000005322 I 0.000
ENSPANG00000017478 Papio anubis ENSPANG00000017478 I 0.000
ENSPSIG00000014168 Pelodiscus sinensis ENSPSIG00000014168 I 0.000
ENSPFOG00000008190 Poecilia formosa ENSPFOG00000008190 I 0.000
ENSPFOG00000012473 Poecilia formosa ENSPFOG00000012473 I 0.000
Pvit_07477 Pogona vitticeps Pvit_07477 I 0.000
ENSPPYG00000004852 Pongo abelii ENSPPYG00000004852 I 0.000
ELK4 Pteropus vampyrus ENSPVAG00000004132 I 0.000
ELK3 Pteropus vampyrus ENSPVAG00000016192 I 0.000
Elk3 Rattus norvegicus ENSRNOG00000004367 I 0.000
Elk4 Rattus norvegicus ENSRNOG00000007887 I 0.000
Sakowv30042090m.g Saccoglossus kowalevskii Sakowv30042090m.g I 0.000
ENSSHAG00000015666 Sarcophilus harrisii ENSSHAG00000015666 I 0.000
ELK3 Sorex araneus ENSSARG00000000754 I 0.000
SPU_012469 Strongylocentrotus purpuratus SPU_012469 I 0.000
ELK3 Sus scrofa ENSSSCG00000023803 I 0.000
ELK4 Sus scrofa ENSSSCG00000025182 I 0.000
ELK3 Taeniopygia guttata ENSTGUG00000008619 I 0.000
elk3 Takifugu rubripes ENSTRUG00000009760 I 0.000
elk3 Takifugu rubripes ENSTRUG00000016937 I 0.000
elk3 Tetraodon nigroviridis ENSTNIG00000006902 I 0.000
elk3 Tetraodon nigroviridis ENSTNIG00000016013 I 0.000
ELK4 Tupaia belangeri ENSTBEG00000015502 I 0.000
ELK3 Tursiops truncatus ENSTTRG00000000268 I 0.000
ELK4 Tursiops truncatus ENSTTRG00000003839 I 0.000
Tal_R002820 Tyto alba Tal_R002820 I 0.000
elk1.S Xenopus laevis XB-GENE-5992136 I 0.000
elk3.L Xenopus laevis XB-GENE-853046 I 0.000
elk1 Xenopus tropicalis XB-GENE-5992134 I 0.000
elk3 Xenopus tropicalis XB-GENE-853037 I 0.000
ENSXMAG00000008577 Xiphophorus maculatus ENSXMAG00000008577 I 0.000
ENSXMAG00000016767 Xiphophorus maculatus ENSXMAG00000016767 I 0.000